Hg_chrom7_TN10mRNA_14086
Organism: Heterodera glycines Gene Locus: chr7:5412442-5416557 Feature type: polypeptideProtein Sequence
Length: 860
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.312 | 1.163 | 0.825 | 0.521 | 1.434 | 1.61 | 0.678 | 0.756 | 0.646 | 1.367 | 0.899 | 1.984 | 0.872 | 0.604 | 1.542 | 0.831 | 0.82 | 0.687 | 0.626 | 0.958 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13292
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKALDKAKEAARKWRV
|
76-96
|
0.998
|
61-96
|
0.998
|
— | — |
0.000
|
— | — |
0.476
|
0.061
|
0.014
|
0.719
|
0.037
|
0.024
|
0.066
|
0.011
|
0.095
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004582
|
1.000
|
2.000
|
Hsc_gene_19631.t1;Hsc_gene_19631.t2
|
Hsc_gene_19631.t1;Hsc_gene_19631.t2
|
— |
Q61371.2 Intraflagellar transport protein 88 homolog [Mus musculus]
|
KAI3409988.1 Tetratricopeptide repeat [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.955|GO:0005575_0.921|GO:0009987_0.918|GO:0110165_0.916|GO:0005622_0.871|GO:0016020_0.837|GO:0043226_0.814|GO:0065007_0.797|GO:0043229_0.792|GO:0071840_0.788|GO:0050789_0.781|GO:0016043_0.776|GO:0051179_0.769|GO:0050794_0.766|GO:0051234_0.755|GO:0006810_0.751|GO:0043227_0.748|GO:0005737_0.741|GO:0071944_0.733|GO:0051641_0.724|GO:0006996_0.722|GO:0005886_0.719|GO:0030030_0.707|GO:0044085_0.706|GO:0120036_0.706|GO:0033036_0.704|GO:0070727_0.703|GO:0051649_0.701|GO:0008104_0.700|GO:0022607_0.698|GO:0007010_0.697|GO:0016192_0.691|GO:0046907_0.691|GO:0048518_0.691|GO:0007017_0.690|GO:0000226_0.684|GO:0007018_0.683|GO:0043228_0.683|GO:0051640_0.683|GO:0051656_0.683|GO:0032991_0.682|GO:0033365_0.682|GO:0043232_0.682|GO:0030031_0.681|GO:0070925_0.681|GO:0120031_0.681|GO:0048193_0.680|GO:0010970_0.679|GO:0030705_0.679|GO:0051648_0.679|GO:0051650_0.679|GO:0099111_0.679|GO:0001578_0.677|GO:0005929_0.677|GO:0006903_0.677|GO:0030990_0.677|GO:0031503_0.677|GO:0035082_0.677|GO:0035735_0.677|GO:0042073_0.677|GO:0042995_0.677|GO:0044782_0.677|GO:0048199_0.677|GO:0048522_0.677|GO:0060271_0.677|GO:0061512_0.677|GO:0097712_0.677|GO:0098590_0.677|GO:0120025_0.677|GO:1905349_0.677|GO:0051128_0.631|GO:0031344_0.613|GO:0120035_0.613|GO:0005856_0.609|GO:0033043_0.607|GO:0044087_0.607|GO:1902115_0.601|GO:0060491_0.599|GO:0120032_0.599|GO:1902017_0.595|GO:0015630_0.571|GO:0005829_0.558|GO:0005815_0.557|GO:0030992_0.540|GO:0036064_0.540|GO:0097542_0.540|GO:0003674_0.522|GO:0005488_0.492|GO:0005814_0.492|GO:0005813_0.491|GO:0005515_0.431|GO:0032501_0.431|GO:0043231_0.431|GO:0008152_0.428|GO:0044238_0.423|GO:0032502_0.416|GO:0048856_0.416|GO:0009058_0.414|GO:0050896_0.413|GO:0044237_0.412|GO:0043170_0.411|GO:0044249_0.396|GO:0007275_0.394|GO:0009059_0.393|GO:0019222_0.393|GO:0051716_0.392|GO:0031323_0.390|GO:0010467_0.386|GO:0048519_0.383|GO:0048731_0.382|GO:0060255_0.382|GO:0080090_0.381|GO:0048869_0.380|GO:0030154_0.375|GO:0048468_0.371|GO:0009889_0.369|GO:0031326_0.369|GO:0048523_0.369|GO:0007154_0.368|GO:0010556_0.366|GO:0010468_0.365|GO:0099080_0.364|GO:0007399_0.363|GO:0023052_0.361|GO:0019538_0.360|GO:0022008_0.359|GO:0006950_0.351
|
IPR011990+167-349_214-343_421-567_568-744+|IPR019734+246-279_285-318_465-500_501-534_535-568_569-602_603-636_637-670_671-704+
|
SM00028+246-279_285-318_465-500_501-534_535-568_569-602_603-636_637-670_671-704+
|
PF13424+247-314+Tetratricopeptide_repeat|PF13428+571-612+Tetratricopeptide_repeat|PF13432+643-704+Tetratricopeptide_repeat
|
— |
PTHR44117+8-860+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-173;730-860
|
1.000
|
174-729
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
96903.810
|
7.892
|
9.500
|
28.140
|
8.721
|
50.233
|
49.767
|
15.000
|
13.140
|
46.512
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
951.304
|
2108.845
|
1273.793
|
774.328
|
536.738
|
437.047
|
788.042
|
614.901
|
352.411
|
1447.513
|
978.183
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.957
|
-1.582
|
-0.609
|
-0.560
|
-0.283
|
0.862
|
0.387
|
0.502
|
— | — | — | — | — |
No JSON data available for plots.