Hg_chrom7_TN10mRNA_14087
Organism: Heterodera glycines Gene Locus: chr7:5417296-5421923 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 0.966 | 0.425 | 1.075 | 0.606 | 1.265 | 0.866 | 1.558 | 0.981 | 1.229 | 0.984 | 2.292 | 2.02 | 1.099 | 2.173 | 0.705 | 1.022 | 0.551 | 1.199 | 0.306 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13293
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
plastid
|
— |
KRRS,KRERRGSKWMNKKHK.,AKNKRERRGSKWMNKKHK
|
— | — |
48-79
|
0.834
|
— | — |
0.000
|
— | — |
0.231
|
0.499
|
0.569
|
0.258
|
0.160
|
0.027
|
0.077
|
0.051
|
0.116
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001369
|
3.000
|
2.000
|
Hsc_gene_19346.t1;Hsc_gene_19348.t1
|
— | — |
Q5AQE4.1 Lipoyl synthase, mitochondrial [Aspergillus nidulans FGSC A4]
|
KAI6235391.1 Lipoyl synthase, mitochondrial [Aphelenchoides besseyi]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009107|GO:0016992|GO:0051539
|
GO:0005575_0.865|GO:0110165_0.865|GO:0016020_0.813|GO:0005622_0.750|GO:0043226_0.741|GO:0043229_0.716|GO:0043227_0.698|GO:0043231_0.691|GO:0005737_0.667|GO:0008150_0.525
|
IPR003698+259-319+
|
— | — | — |
PTHR10949+259-319+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
373-385
|
1.000
|
1-372
|
8trw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
44335.930
|
11.598
|
49.000
|
26.234
|
12.987
|
46.494
|
53.506
|
20.260
|
5.974
|
43.896
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
133.780
|
221.019
|
184.310
|
150.418
|
98.981
|
99.503
|
61.317
|
130.420
|
145.881
|
121.139
|
131.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.491
|
-0.692
|
— |
-0.636
|
— |
-0.687
|
— |
-0.947
|
— | — | — | — | — |
No JSON data available for plots.