Hg_chrom7_TN10mRNA_14090
Organism: Heterodera glycines Gene Locus: chr7:5430909-5432428 Feature type: polypeptideProtein Sequence
Length: 198
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.47 | 1.292 | 0.918 | 1.916 | 0.758 | 0.777 | 0.661 | 1.263 | 1.908 | 1.024 | 0.383 | 1.188 | 1.684 | 0.874 | 1.34 | 1.876 | 0.662 | 0.918 | 1.943 | 0.149 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13296
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.735
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.447
|
— | — |
0.154
|
0.265
|
0.055
|
0.176
|
0.103
|
0.126
|
0.213
|
0.012
|
0.217
|
0.768
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004577
|
2.000
|
1.000
|
Hsc_gene_19672.t1
|
Hsc_gene_19672.t1
|
— | — |
CAD5220727.1 unnamed protein product [Bursaphelenchus xylophilus];CAG9107043.1 unnamed protein product [Bursaphelenchus xylophilus]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.879|GO:0110165_0.876|GO:0016020_0.769|GO:0005622_0.762|GO:0005737_0.728|GO:0043226_0.717|GO:0071944_0.717|GO:0043229_0.701|GO:0043227_0.697|GO:0005886_0.695|GO:0043231_0.686|GO:0005773_0.622|GO:0012505_0.608|GO:0005794_0.563
|
IPR001507+1-198+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-198
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
22185.360
|
6.893
|
1.500
|
21.212
|
11.616
|
46.970
|
53.030
|
11.616
|
9.596
|
53.535
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
41.714
|
103.287
|
118.893
|
63.010
|
21.870
|
28.347
|
12.071
|
73.356
|
0.000
|
24.686
|
14.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.850
|
-0.806
|
-1.558
|
— |
-1.222
|
1.277
|
-2.465
|
— |
6.835
|
— | — | — |
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