Hg_chrom7_TN10mRNA_14092
Organism: Heterodera glycines Gene Locus: chr7:5436182-5440280 Feature type: polypeptideProtein Sequence
Length: 618
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.696 | 1.091 | 0.912 | 1.228 | 0.998 | 0.954 | 0.655 | 0.971 | 1.69 | 1.159 | 1.005 | 1.808 | 1.393 | 0.84 | 1.024 | 1.04 | 0.875 | 0.907 | 0.747 | 1.095 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13298
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.860
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
nucleus
|
KRIR,KKVNVSEDSVHYFKKFGK
|
— | — | — | — |
1-26
|
0.688
|
0.962
|
2.000
|
2.000
|
0.152
|
0.071
|
0.020
|
0.171
|
0.349
|
0.614
|
0.396
|
0.099
|
0.731
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011276
|
1.000
|
1.000
|
Hsc_gene_19674.t1
|
Hsc_gene_19674.t1
|
— |
P27041.1 Activin receptor type-2B [Xenopus laevis]
|
KAI1729154.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004675|GO:0005524|GO:0006468|GO:0007178|GO:0016020
|
GO:0008150_0.940|GO:0009987_0.856|GO:0050896_0.837|GO:0065007_0.832|GO:0050789_0.815|GO:0050794_0.795|GO:0005575_0.787|GO:0110165_0.787|GO:0003674_0.784|GO:0032501_0.769|GO:0051716_0.744|GO:0023052_0.741|GO:0007154_0.738|GO:0032502_0.709|GO:0048856_0.709|GO:0007165_0.700|GO:0005488_0.683|GO:0007275_0.683|GO:0007166_0.621|GO:0016020_0.621|GO:0003824_0.582|GO:0008152_0.582|GO:0007167_0.575|GO:0071944_0.575|GO:0048513_0.573|GO:0007178_0.570|GO:0005886_0.547|GO:0140096_0.542|GO:0005515_0.539|GO:0016740_0.537|GO:0009888_0.535|GO:0048731_0.522|GO:0048869_0.520|GO:0030154_0.517|GO:0048518_0.513|GO:0141091_0.510|GO:0009719_0.507|GO:0044237_0.505|GO:0048522_0.501
|
IPR000333+92-587+|IPR000719+302-593_302-594_305-585+|IPR008271+426-438+|IPR011009+296-586+|IPR045860+77-197+
|
SM00220+302-593+
|
PF00069+305-585+Protein_kinase_domain
|
— |
PTHR23255+92-587+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-618
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
69986.870
|
7.811
|
10.000
|
24.595
|
11.650
|
45.631
|
54.369
|
13.592
|
11.003
|
47.735
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1162.051
|
2620.078
|
1154.287
|
908.073
|
723.969
|
803.169
|
1310.534
|
1137.898
|
851.033
|
1198.947
|
1049.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.413
|
-1.666
|
-0.237
|
-0.359
|
— |
0.716
|
0.399
|
0.345
|
— | — | — | — | — |