SCN Proteipedia

Hg_chrom7_TN10mRNA_14097

Organism: Heterodera glycines Gene Locus: chr7:5454536-5459327 Feature type: polypeptide

Protein Sequence

Length: 1,085

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.879	1.222	0.704	0.604	1.751	1.654	0.549	0.691	0.963	1.046	0.936	1.464	1.075	1.081	1.486	1.303	1.118	0.503	0.354	0.407	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13303	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKAAAYERSPKKIAK,KKRNNYKQKIGRRRKKIGR,KRNNYKQKIGRRRKKIGRQ	—	—	—	—	—	—	0.000	—	—	0.903	0.065	0.011	0.310	0.054	0.023	0.034	0.017	0.048	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011281	1.000	1.000	Hsc_gene_19679.t1	Hsc_gene_19628.t1;Hsc_gene_19679.t1	—	Q9WU42.3 Nuclear receptor corepressor 2 [Mus musculus]	KAI1721408.1 nuclear receptor corepressor 1 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.959\|GO:0005575_0.933\|GO:0110165_0.933\|GO:0009987_0.925\|GO:0065007_0.906\|GO:0050789_0.894\|GO:0005622_0.880\|GO:0050794_0.873\|GO:0016020_0.852\|GO:0043226_0.847\|GO:0043229_0.822\|GO:0008152_0.811\|GO:0043170_0.811\|GO:0019222_0.793\|GO:0031323_0.787\|GO:0044237_0.787\|GO:0009058_0.785\|GO:0009059_0.785\|GO:0044249_0.785\|GO:0010467_0.781\|GO:0060255_0.778\|GO:0043227_0.768\|GO:0003674_0.762\|GO:0005488_0.762\|GO:0009889_0.762\|GO:0031326_0.761\|GO:0010468_0.753\|GO:0010556_0.753\|GO:0043231_0.736\|GO:0005634_0.712\|GO:0005515_0.698\|GO:0048519_0.695\|GO:0044238_0.686\|GO:0048523_0.680\|GO:0080090_0.674\|GO:0006139_0.672\|GO:0090304_0.665\|GO:0034654_0.659\|GO:0141187_0.659\|GO:0016070_0.650\|GO:0032774_0.650\|GO:0009892_0.639\|GO:0010605_0.635\|GO:0031974_0.635\|GO:0031981_0.635\|GO:0043233_0.635\|GO:0070013_0.635\|GO:0031324_0.634\|GO:0032991_0.632\|GO:0019219_0.631\|GO:0051252_0.631\|GO:0006351_0.626\|GO:0009890_0.626\|GO:0010558_0.626\|GO:0031327_0.626\|GO:0006355_0.619\|GO:2001141_0.619\|GO:0005654_0.609\|GO:0006366_0.609\|GO:0006357_0.604\|GO:0140110_0.576\|GO:0060090_0.571\|GO:0071840_0.571\|GO:0016043_0.569\|GO:0030674_0.567\|GO:0003712_0.563\|GO:0050896_0.536\|GO:0005737_0.522\|GO:0051716_0.520\|GO:0045934_0.519\|GO:0051253_0.519\|GO:0045892_0.515\|GO:1902679_0.515\|GO:0000122_0.508	IPR001005+438-486_440-483+\|IPR009057+440-491+\|IPR017884+437-488+\|IPR051571+54-848+	SM00717+438-486+	PF00249+440-483+Myb-like_DNA-binding_domain	G3DSA:1.10.10.60:FF:000012+438-500+Metastasis-associated_1_family,_member_3	PTHR13992+54-848+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-267;662-1085	1.000	268-661	4a69_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.716	122189.870	6.290	-2.500	29.217	7.097	56.866	43.134	14.839	14.378	47.926

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	paleturquoise	1904.887	2508.192	2398.713	1470.482	1495.699	1502.419	2279.242	1614.749	3260.748	912.259	1918.754

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.294	-0.908	-0.597	—	—	0.612	—	0.641	—	—	—	—	—

No JSON data available for plots.

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