Hg_chrom7_TN10mRNA_14099
Organism: Heterodera glycines Gene Locus: chr7:5461328-5462749 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.134 | 0.512 | 0.8 | 0.976 | 1.205 | 0.323 | 0.749 | 2.044 | 0.839 | 1.87 | 0.476 | 1.11 | 1.136 | 0.907 | 1.348 | 1.303 | 0.773 | 1.001 | 0.968 | 0.647 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13305
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— |
LGEV
|
51-72
|
0.981
|
7-45
|
0.978
|
— | — |
0.000
|
— | — |
0.669
|
0.209
|
0.010
|
0.462
|
0.149
|
0.206
|
0.182
|
0.023
|
0.107
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011283
|
1.000
|
1.000
|
Hsc_gene_19681.t1
|
Hsc_gene_19681.t1
|
— |
G5ECN5.1 STE20-related kinase adapter protein strd-1 [Caenorhabditis elegans]
|
KAF7623541.1 Protein kinase domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468|GO:0043539
|
GO:0008150_0.905|GO:0009987_0.825|GO:0005575_0.822|GO:0065007_0.820|GO:0050789_0.811|GO:0110165_0.793|GO:0050794_0.764|GO:0003674_0.746|GO:0005622_0.741|GO:0003824_0.700|GO:0016740_0.660|GO:0140096_0.593|GO:0050896_0.579|GO:0005737_0.572|GO:0016772_0.557|GO:0008152_0.541|GO:0016020_0.539|GO:0016301_0.534|GO:0016773_0.530|GO:0004672_0.518|GO:0044237_0.514
|
IPR000719+3-295_64-288+|IPR011009+62-290+|IPR047173+97-295+
|
— |
PF00069+64-288+Protein_kinase_domain
|
— |
PTHR48014+97-295+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
35032.250
|
6.554
|
0.500
|
25.472
|
11.635
|
42.767
|
57.233
|
13.836
|
11.635
|
50.629
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
365.993
|
476.856
|
396.240
|
385.007
|
427.043
|
330.171
|
1059.258
|
375.217
|
46.730
|
272.498
|
175.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.498
|
-0.446
|
— | — |
-0.357
|
1.692
|
— |
1.642
|
— | — | — | — | — |
No JSON data available for plots.