Hg_chrom7_TN10mRNA_14100
Organism: Heterodera glycines Gene Locus: chr7:5463101-5468327 Feature type: polypeptideProtein Sequence
Length: 847
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 1.181 | 0.623 | 1.059 | 0.984 | 1.362 | 0.534 | 1.181 | 1.181 | 1.5 | 0.644 | 1.111 | 1.246 | 1.43 | 0.819 | 1.703 | 0.948 | 0.769 | 0.636 | 0.66 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13306
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.655
|
0.123
|
0.010
|
0.603
|
0.133
|
0.165
|
0.206
|
0.099
|
0.120
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011284
|
1.000
|
1.000
|
Hsc_gene_19682.t1
|
Hsc_gene_19682.t1;Hsc_gene_19682.t2
|
— |
O45962.4 Regulation of longevity by E3 ubiquitin-protein ligase [Caenorhabditis elegans]
|
KAI3409936.1 RING [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.963|GO:0003674_0.843|GO:0005575_0.814|GO:0110165_0.809|GO:0008152_0.776|GO:0043170_0.776|GO:0044238_0.771|GO:0005622_0.749|GO:0005488_0.662|GO:0009987_0.634|GO:0065007_0.629|GO:0050789_0.619|GO:0050794_0.611|GO:0043226_0.600|GO:0043229_0.576|GO:0050896_0.575|GO:0032501_0.565|GO:0097159_0.538|GO:0003676_0.529|GO:0048518_0.522|GO:0003723_0.506
|
IPR041523+279-334+|IPR048575+190-276+|IPR052249+5-352+
|
— |
PF18386+279-334+Roquin_II_domain|PF21206+190-276+Roquin_1/2-like,_ROQ_domain
|
— |
PTHR13139+5-352+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
688-753
|
2.000
|
1-687;754-847
|
4txa_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
93580.660
|
6.571
|
1.000
|
19.953
|
9.917
|
48.052
|
51.948
|
10.626
|
9.327
|
52.302
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
1614.995
|
5429.907
|
1590.751
|
1211.703
|
985.809
|
1147.697
|
1632.347
|
1129.545
|
1936.986
|
689.954
|
1224.396
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.001
|
-2.301
|
-0.284
|
-0.329
|
— |
0.518
|
— |
0.673
|
— | — | — | — | — |
No JSON data available for plots.