Hg_chrom7_TN10mRNA_14101
Organism: Heterodera glycines Gene Locus: chr7:5468444-5469677 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.389 | 1.558 | 1.479 | 1.155 | 1.196 | 1.104 | 0.285 | 0.957 | 1.276 | 1.616 | 0.87 | 0.844 | 2.127 | 0.828 | 1.367 | 0.957 | 0.706 | 0.725 | 0.736 | 0.704 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13307
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.745
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.688
|
0.244
|
0.010
|
0.599
|
0.065
|
0.081
|
0.160
|
0.012
|
0.044
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011285
|
1.000
|
1.000
|
Hsc_gene_19683.t1
|
Hsc_gene_19683.t1
|
— |
Q5WRN3.1 Protein-lysine N-methyltransferase M142.8 [Caenorhabditis elegans]
|
KAI3409936.1 RING [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168|GO:0016279
|
GO:0005575_0.895|GO:0110165_0.895|GO:0005622_0.874|GO:0003674_0.828|GO:0005737_0.821|GO:0003824_0.728|GO:0016740_0.695|GO:0140096_0.683|GO:0008150_0.674|GO:0008168_0.655|GO:0008757_0.655|GO:0016741_0.655|GO:0008170_0.650|GO:0008276_0.650|GO:0016278_0.650|GO:0016279_0.650|GO:0008152_0.533|GO:0044238_0.516|GO:0043170_0.505
|
IPR019369+5-204_5-209+|IPR041370+39-205+
|
— |
PF10237+39-205+Probable_N6-adenine_methyltransferase
|
— |
PTHR13200+5-204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
24557.970
|
5.146
|
-4.000
|
29.665
|
12.919
|
51.675
|
48.325
|
14.354
|
15.311
|
44.019
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
442.091
|
933.650
|
223.700
|
232.968
|
288.573
|
239.693
|
449.543
|
231.743
|
91.153
|
890.831
|
548.112
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.293
|
-2.140
|
— |
0.277
|
— |
0.915
|
— |
1.093
|
-3.430
|
— | — | — | — |
No JSON data available for plots.