Hg_chrom7_TN10mRNA_14102
Organism: Heterodera glycines Gene Locus: chr7:5470274-5471133 Feature type: polypeptideProtein Sequence
Length: 70
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.997 | 0.664 | 0.519 | 2.956 | 1.905 | 1.099 | 1.19 | 0.714 | 1.27 | 0.386 | 1.732 | 1.681 | 0.397 | 0.275 | 0.583 | 1.224 | 1.171 | 0.433 | 0.0 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13308
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.367
|
0.580
|
0.096
|
0.307
|
0.264
|
0.068
|
0.146
|
0.089
|
0.080
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q9P7Z7.1 Cytochrome c oxidase copper chaperone [Schizosaccharomyces pombe 972h-]
|
KAF7629218.1 Cytochrome c oxidase copper chaperone [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005507|GO:0005758|GO:0016531
|
GO:0005575_0.731|GO:0110165_0.720|GO:0008150_0.707|GO:0003674_0.646|GO:0005488_0.646|GO:0005622_0.603|GO:0005737_0.539|GO:0009987_0.527
|
IPR007745+11-70_25-70+|IPR009069+14-70+
|
— |
PF05051+25-70+Cytochrome_C_oxidase_copper_chaperone_(COX17)
|
— |
PTHR16719+11-70+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15
|
1.000
|
16-70
|
2rnb_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
7551.540
|
6.858
|
0.500
|
30.000
|
5.714
|
52.857
|
47.143
|
15.714
|
14.286
|
52.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkturquoise
|
515.656
|
176.562
|
403.548
|
518.473
|
717.243
|
576.629
|
623.419
|
288.760
|
878.964
|
357.534
|
581.004
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
1.417
|
0.472
|
0.436
|
-0.300
|
— |
-1.103
|
1.254
|
— | — | — | — | — |
No JSON data available for plots.