Hg_chrom7_TN10mRNA_14103
Organism: Heterodera glycines Gene Locus: chr7:5471262-5472423 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 1.047 | 0.818 | 1.034 | 1.083 | 1.41 | 0.417 | 0.75 | 2.111 | 1.216 | 1.061 | 0.882 | 1.111 | 1.346 | 0.612 | 1.071 | 0.902 | 0.606 | 1.538 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13309
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.545
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.509
|
0.186
|
0.020
|
0.651
|
0.225
|
0.187
|
0.241
|
0.039
|
0.132
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011286
|
1.000
|
1.000
|
Hsc_gene_19684.t1
|
Hsc_gene_19684.t1
|
— |
P52484.3 Ubiquitin-conjugating enzyme E2 21 [Caenorhabditis elegans]
|
KAI1729165.1 ubiquitin-conjugating enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.812|GO:0003674_0.733|GO:0008152_0.595|GO:0005575_0.594|GO:0110165_0.582|GO:0044238_0.580|GO:0003824_0.569|GO:0043170_0.569|GO:0016740_0.546|GO:0140096_0.540|GO:0016746_0.535|GO:0019538_0.535|GO:0016755_0.530|GO:0019787_0.530|GO:0004842_0.528|GO:0005622_0.518
|
IPR000608+4-154_8-148_8-149+|IPR009060+157-199+|IPR015940+158-200_165-198+|IPR016135+1-155_1-157+|IPR023313+80-96+
|
SM00212+10-154+
|
PF00179+8-148+Ubiquitin-conjugating_enzyme|PF00627+165-198+UBA/TS-N_domain
|
G3DSA:3.10.110.10:FF:000037+3-156+ubiquitin-conjugating_enzyme_E2_27
|
PTHR24068+20-139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-200
|
3k9p_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
22427.850
|
6.234
|
-0.500
|
22.500
|
10.000
|
45.500
|
54.500
|
11.500
|
11.000
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
926.795
|
362.799
|
611.921
|
706.002
|
733.951
|
609.014
|
656.140
|
699.336
|
1643.161
|
1180.171
|
1378.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
0.823
|
0.315
|
— |
-0.254
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.