Hg_chrom7_TN10mRNA_14104
Organism: Heterodera glycines Gene Locus: chr7:5473721-5474360 Feature type: polypeptideProtein Sequence
Length: 140
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.412 | 1.329 | 0.649 | 0.739 | 0.476 | 0.549 | 1.276 | 0.0 | 1.27 | 0.676 | 1.407 | 1.681 | 0.992 | 0.687 | 1.749 | 0.918 | 0.351 | 1.623 | 0.549 | 0.63 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13310
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RKKVLQAVVVRQRKQYRRK,KKVLQAVVVRQRKQYRRKD
|
3-23
|
0.956
|
51-86
|
0.965
|
— | — |
0.000
|
— | — |
0.503
|
0.293
|
0.128
|
0.359
|
0.223
|
0.075
|
0.092
|
0.071
|
0.144
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011287
|
1.000
|
1.000
|
Hsc_gene_19685.t1
|
Hsc_gene_19685.t1
|
B0336.10
|
P48158.1 Large ribosomal subunit protein uL14 [Caenorhabditis elegans]
|
KAI1721403.1 ribosomal protein l14p/L23e domain-containing protein [Ditylenchus destructor];KAI1729168.1 ribosomal protein l14p/L23e domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.911|GO:0110165_0.903|GO:0005622_0.745|GO:0043226_0.715|GO:0043229_0.697|GO:0005737_0.622|GO:0016020_0.599|GO:0043227_0.526|GO:0043231_0.526
|
IPR000218+3-139_19-140_21-139+|IPR019972+79-105+|IPR036853+1-140_11-139+
|
SM01374+19-140+
|
PF00238+21-139+Ribosomal_protein_L14p/L23e
|
G3DSA:2.40.150.20:FF:000003+1-140+60S_ribosomal_protein_L23
|
PTHR11761+3-139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-140
|
9cai_CV
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.527
|
15014.570
|
11.120
|
16.000
|
24.286
|
6.429
|
40.714
|
59.286
|
17.857
|
6.429
|
57.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
5935.110
|
1997.984
|
3544.696
|
7858.280
|
8050.194
|
5817.692
|
3778.738
|
2056.880
|
9624.299
|
6333.706
|
7743.960
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.598
|
1.839
|
1.257
|
— |
-0.453
|
-0.611
|
-1.606
|
1.022
|
— | — | — | — | — |
No JSON data available for plots.