Hg_chrom7_TN10mRNA_14105
Organism: Heterodera glycines Gene Locus: chr7:5474430-5477734 Feature type: polypeptideProtein Sequence
Length: 631
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 1.069 | 0.461 | 0.82 | 0.581 | 0.894 | 0.528 | 1.585 | 1.127 | 2.142 | 0.504 | 1.492 | 2.685 | 0.61 | 1.164 | 1.245 | 0.857 | 0.84 | 1.463 | 1.025 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13311
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.069
|
0.104
|
0.010
|
0.119
|
0.847
|
0.303
|
0.607
|
0.003
|
0.250
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004583
|
1.000
|
2.000
|
Hsc_gene_19686.t1;Hsc_gene_19686.t2
|
Hsc_gene_19686.t1;Hsc_gene_19686.t2
|
— |
P34413.2 C-mannosyltransferase dpy-19 [Caenorhabditis elegans]
|
KAI1721404.1 q-cell neuroblast polarization domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.945|GO:0110165_0.945|GO:0016020_0.797|GO:0005622_0.698|GO:0008150_0.681|GO:0009987_0.648|GO:0005886_0.602|GO:0071944_0.602|GO:0005737_0.567|GO:0043226_0.556|GO:0043227_0.548|GO:0043229_0.539|GO:0043231_0.528|GO:0003674_0.501
|
IPR018732+9-630_20-630+
|
— |
PF10034+20-630+Q-cell_neuroblast_polarisation
|
— |
PTHR31488+9-630+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-631
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
72964.530
|
9.418
|
29.000
|
18.225
|
18.225
|
40.254
|
59.746
|
12.203
|
6.022
|
42.314
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1053.313
|
1750.780
|
1593.864
|
1223.587
|
1105.558
|
912.863
|
1029.471
|
1197.721
|
1167.613
|
427.343
|
744.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.366
|
-0.654
|
-0.272
|
-0.178
|
-0.262
|
— |
0.287
|
— | — | — | — | — | — |
No JSON data available for plots.