Hg_chrom7_TN10mRNA_14106
Organism: Heterodera glycines Gene Locus: chr7:5478031-5481314 Feature type: polypeptideProtein Sequence
Length: 298
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 0.702 | 0.915 | 0.926 | 1.174 | 0.688 | 0.599 | 0.503 | 1.268 | 1.633 | 0.763 | 1.184 | 1.119 | 1.097 | 1.712 | 1.438 | 0.935 | 0.814 | 1.033 | 0.691 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13312
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-19
|
0.984
|
1.000
|
0.000
|
0.000
|
0.048
|
0.159
|
0.010
|
0.133
|
0.355
|
0.122
|
0.385
|
0.101
|
0.892
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011288
|
1.000
|
1.000
|
Hsc_gene_19687.t1
|
Hsc_gene_19687.t1
|
— | — |
KAI1721405.1 immunoglobulin v-set domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.933|GO:0110165_0.931|GO:0016020_0.875|GO:0071944_0.797|GO:0005886_0.777|GO:0008150_0.712|GO:0009987_0.659|GO:0065007_0.619|GO:0050789_0.609|GO:0050794_0.594|GO:0032501_0.549|GO:0032502_0.531|GO:0048856_0.531|GO:0071840_0.526|GO:0016043_0.520|GO:0007275_0.504
|
IPR003599+47-149_172-269+|IPR007110+44-149_179-252+|IPR013098+178-253+|IPR013106+48-138+|IPR013783+43-154_174-269+|IPR036179+48-148_175-252+|IPR037448+46-254+
|
SM00409+47-149_172-269+
|
PF07679+178-253+Immunoglobulin_I-set_domain|PF07686+48-138+Immunoglobulin_V-set_domain
|
— |
PTHR23279+46-254+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-298
|
6pll_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
33641.750
|
8.287
|
5.500
|
26.510
|
8.725
|
47.987
|
52.013
|
14.430
|
12.081
|
48.322
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
orange
|
282.112
|
135.625
|
339.753
|
157.106
|
74.233
|
57.576
|
165.233
|
209.718
|
782.791
|
219.929
|
461.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.093
|
— |
-1.002
|
-1.113
|
— |
1.530
|
1.763
|
— | — | — | — | — | — |