Hg_chrom7_TN10mRNA_14107
Organism: Heterodera glycines Gene Locus: chr7:5481229-5483020 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.562 | 1.236 | 0.878 | 0.833 | 1.288 | 0.867 | 0.575 | 0.966 | 1.825 | 0.849 | 1.098 | 1.137 | 1.342 | 0.465 | 1.775 | 0.897 | 1.267 | 1.171 | 0.743 | 0.71 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13313
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.849
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
PEKKRKC
|
— | — | — | — | — | — |
0.000
|
— | — |
0.258
|
0.243
|
0.020
|
0.333
|
0.275
|
0.616
|
0.373
|
0.025
|
0.496
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011289
|
1.000
|
1.000
|
Hsc_gene_19688.t1
|
Hsc_gene_19688.t1
|
— |
Q15286.1 Ras-related protein Rab-35 [Homo sapiens]
|
KAI3409940.1 Ras- protein Rab-35 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.962|GO:0110165_0.960|GO:0005622_0.826|GO:0016020_0.807|GO:0008150_0.789|GO:0005886_0.785|GO:0071944_0.785|GO:0043226_0.752|GO:0043229_0.732|GO:0005737_0.723|GO:0009987_0.713|GO:0043227_0.640|GO:0043231_0.615|GO:0005773_0.590|GO:0012505_0.536|GO:0051179_0.536|GO:0006810_0.509|GO:0051234_0.509
|
IPR001806+6-207_16-174_17-177+|IPR005225+15-170+|IPR027417+8-206_10-188+|IPR050227+14-194+
|
SM00173+12-177+|SM00174+17-177+|SM00175+15-177+|SM00176+20-203+|SM00177+1-181+
|
PF00071+16-174+Ras_family
|
G3DSA:3.40.50.300:FF:000404+7-206+Putative_ras-related_protein_Rab-35
|
PTHR47977+14-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-207
|
3tw8_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
23867.390
|
9.438
|
9.000
|
30.435
|
10.145
|
53.140
|
46.860
|
17.874
|
12.560
|
46.377
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
violet
|
513.415
|
414.459
|
423.628
|
503.861
|
706.890
|
592.522
|
1263.831
|
569.978
|
446.578
|
233.069
|
324.572
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.199
|
0.144
|
0.359
|
0.457
|
-0.240
|
1.104
|
— |
1.291
|
— | — |
2.589
|
— | — |
No JSON data available for plots.