Hg_chrom7_TN10mRNA_14108
Organism: Heterodera glycines Gene Locus: chr7:5483379-5485092 Feature type: polypeptideProtein Sequence
Length: 283
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.575 | 1.397 | 1.285 | 0.609 | 1.649 | 0.815 | 0.631 | 1.06 | 0.942 | 1.289 | 1.071 | 2.079 | 1.57 | 0.544 | 1.514 | 1.161 | 0.695 | 0.696 | 0.544 | 0.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13314
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.574
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRERELRANVLKKSEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.970
|
0.082
|
0.009
|
0.228
|
0.015
|
0.025
|
0.031
|
0.004
|
0.013
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011290
|
1.000
|
1.000
|
Hsc_gene_19689.t2
|
Hsc_gene_19689.t1;Hsc_gene_19689.t2
|
— | — |
KAF7634276.1 MAGE domain-containing protein [Meloidogyne graminicola]
|
MDD4203200
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002190+241-278+|IPR037445+29-276+|IPR041899+140-281+
|
— | — | — |
PTHR11736+29-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37;279-283
|
1.000
|
38-278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
32610.800
|
5.503
|
-4.000
|
33.569
|
10.247
|
55.124
|
44.876
|
16.608
|
16.961
|
44.876
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
1119.421
|
987.500
|
888.061
|
1046.009
|
990.935
|
670.709
|
764.535
|
782.442
|
496.129
|
2226.549
|
1484.940
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.382
|
— |
0.344
|
— |
-0.548
|
0.197
|
— | — |
-2.295
|
— | — | — | — |
No JSON data available for plots.