Hg_chrom7_TN10mRNA_14109
Organism: Heterodera glycines Gene Locus: chr7:5485250-5488031 Feature type: polypeptideProtein Sequence
Length: 545
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.491 | 0.768 | 0.967 | 0.696 | 0.948 | 1.082 | 0.437 | 1.56 | 1.101 | 1.587 | 0.806 | 1.619 | 1.988 | 0.953 | 0.786 | 1.625 | 0.993 | 0.862 | 1.129 | 0.917 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13315
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
1-34
|
0.896
|
— | — | — | — |
0.000
|
— | — |
0.380
|
0.292
|
0.034
|
0.278
|
0.749
|
0.127
|
0.246
|
0.045
|
0.193
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011291
|
1.000
|
1.000
|
Hsc_gene_19690.t1
|
Hsc_gene_19690.t1
|
— |
Q5M7R3.2 Transmembrane protein 209 [Xenopus tropicalis]
|
KAI1721380.1 transmembrane protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019176+95-543_101-543+
|
— |
PF09786+95-543+Cytochrome_B561,_N_terminal
|
— |
PTHR21780+101-543+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-545
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
62297.360
|
6.358
|
-1.500
|
23.303
|
14.862
|
48.257
|
51.743
|
12.294
|
11.009
|
46.606
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellowgreen
|
1242.711
|
722.670
|
1255.003
|
1090.691
|
1151.086
|
1013.991
|
1284.693
|
916.170
|
1222.216
|
1732.334
|
1513.712
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.567
|
0.457
|
— | — | — |
0.350
|
-0.252
|
0.629
|
— | — | — | — | — |
No JSON data available for plots.