Hg_chrom7_TN10mRNA_14112
Organism: Heterodera glycines Gene Locus: chr7:5490855-5494168 Feature type: polypeptideProtein Sequence
Length: 625
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.726 | 1.451 | 1.047 | 0.386 | 1.733 | 1.19 | 0.495 | 0.88 | 1.351 | 1.276 | 0.824 | 1.224 | 1.6 | 0.646 | 1.143 | 1.12 | 0.944 | 0.8 | 0.738 | 0.612 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13318
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.253
|
0.268
|
0.028
|
0.590
|
0.254
|
0.497
|
0.476
|
0.050
|
0.238
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011294
|
1.000
|
1.000
|
Hsc_gene_19693.t1
|
Hsc_gene_19693.t1;Hsc_gene_19693.t2
|
— |
Q86YJ7.4 Ankyrin repeat domain-containing protein 13B [Homo sapiens]
|
KAH7731605.1 Ubiquitin interaction motif family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.947|GO:0009987_0.902|GO:0005575_0.890|GO:0110165_0.886|GO:0005622_0.819|GO:0003674_0.796|GO:0065007_0.789|GO:0016020_0.783|GO:0050789_0.781|GO:0050794_0.754|GO:0005737_0.716|GO:0005488_0.695|GO:0051179_0.677|GO:0005515_0.675|GO:0071944_0.668|GO:0005886_0.661|GO:0043226_0.641|GO:0043229_0.602|GO:0043227_0.591|GO:0006810_0.571|GO:0051234_0.571|GO:0071840_0.561|GO:0016043_0.557|GO:0043231_0.539|GO:0048519_0.539|GO:0048523_0.526|GO:0006996_0.509
|
IPR002110+18-48_18-86_55-84_55-87+|IPR003903+609-625+|IPR021832+15-506_204-501+|IPR036770+4-147_22-110+
|
SM00248+18-48_55-84+
|
PF11904+204-501+GPCR-chaperone|PF12796+18-86+Ankyrin_repeats_(3_copies)
|
— |
PTHR12447+15-506+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;623-625
|
1.000
|
13-622
|
6sa8_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
71466.310
|
4.614
|
-26.500
|
28.960
|
10.560
|
53.440
|
46.560
|
12.800
|
16.160
|
45.760
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1994.621
|
1836.238
|
1512.169
|
1319.421
|
1435.913
|
1274.160
|
1782.534
|
1826.284
|
3560.880
|
1935.790
|
2632.257
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.510
|
-0.614
|
— | — |
-0.158
|
0.495
|
0.416
|
— | — | — | — | — | — |
No JSON data available for plots.