SCN Proteipedia

Hg_chrom7_TN10mRNA_14113

Organism: Heterodera glycines Gene Locus: chr7:5494720-5496737 Feature type: polypeptide

Protein Sequence

Length: 531

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.051	0.701	1.13	0.13	0.973	1.014	1.143	0.942	1.674	1.069	0.827	1.44	1.046	0.905	0.999	0.834	0.988	1.37	0.0	0.72	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13319	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	1-21	0.999	18-38	1.000	—	—	0.000	—	—	0.120	0.907	0.350	0.103	0.061	0.059	0.095	0.152	0.083	0.011

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011295	1.000	1.000	Hsc_gene_19694.t1	Hsc_gene_19694.t1	—	P46561.2 ATP synthase subunit beta, mitochondrial [Caenorhabditis elegans]	KAI3409922.1 atp2, beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0015986\|GO:0016887\|GO:0045261\|GO:0046034\|GO:0046933\|GO:1902600	GO:0005575_0.815\|GO:0110165_0.809\|GO:0016020_0.728\|GO:0005622_0.681\|GO:0005737_0.669\|GO:0008150_0.661\|GO:0043226_0.611\|GO:0003674_0.591\|GO:0043229_0.588\|GO:0043227_0.557\|GO:0043231_0.543	IPR000194+190-409+\|IPR003593+202-472+\|IPR004100+67-133+\|IPR005722+62-527_64-527+\|IPR020003+400-409+\|IPR024034+412-531+\|IPR027417+136-411_137-414+\|IPR036121+62-135+\|IPR050053+48-529+	SM00382+202-472+	PF00006+190-409+ATP_synthase_alpha/beta_family,_nucleotide-binding_domain\|PF02874+67-133+ATP_synthase_alpha/beta_family,_beta-barrel_domain\|PF22919+414-504+C-terminal_domain_of_V_and_A_type_ATP_synthase	G3DSA:1.10.1140.10:FF:000001+412-531+ATP_synthase_subunit_beta\|G3DSA:2.40.10.170:FF:000004+54-135+ATP_synthase_subunit_beta\|G3DSA:3.40.50.300:FF:000026+136-411+ATP_synthase_subunit_beta	PTHR15184+48-529+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-531	8ki3_F	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.616	57182.430	5.860	-4.000	24.294	8.098	43.126	56.874	12.241	12.053	53.861

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	darkred	9153.212	1636.219	5809.621	13469.492	19503.164	15396.780	10834.871	6133.347	3437.606	10173.290	7286.568

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.600	2.904	1.321	0.502	-0.326	-0.496	-1.438	0.966	-1.675	2.131	—	—	—

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