Hg_chrom7_TN10mRNA_14116
Organism: Heterodera glycines Gene Locus: chr7:5501933-5503466 Feature type: polypeptideProtein Sequence
Length: 338
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 1.032 | 0.914 | 0.408 | 0.888 | 0.986 | 0.669 | 1.183 | 1.118 | 1.639 | 0.852 | 1.392 | 1.397 | 0.797 | 1.389 | 1.183 | 1.455 | 1.076 | 0.228 | 0.261 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13322
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.746
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
57-77
|
0.916
|
— | — | — | — |
0.000
|
— | — |
0.225
|
0.680
|
0.126
|
0.408
|
0.095
|
0.068
|
0.051
|
0.193
|
0.073
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004584
|
2.000
|
1.000
|
Hsc_gene_19698.t1
|
Hsc_gene_19698.t1
|
— |
Q9UGM6.1 Tryptophan--tRNA ligase, mitochondrial [Homo sapiens]
|
KAH7731608.1 tryptophanyl-tRNA synthetase [Aphelenchus avenae]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004830|GO:0005524|GO:0006418|GO:0006436
|
GO:0005575_0.922|GO:0110165_0.922|GO:0016020_0.771|GO:0005622_0.769|GO:0008150_0.736|GO:0005737_0.703|GO:0009987_0.689|GO:0043226_0.637|GO:0043229_0.634|GO:0043227_0.597|GO:0043231_0.580|GO:0003674_0.506
|
IPR001412+11-20+|IPR002305+5-265+|IPR002306+2-337_5-289_15-31_74-93_151-172_204-214+|IPR014729+6-336+|IPR050203+3-337+
|
— |
PF00579+5-265+tRNA_synthetases_class_I_(W_and_Y)
|
G3DSA:1.10.240.10:FF:000002+195-305+Tryptophan--tRNA_ligase
|
PTHR43766+3-337+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
37648.330
|
9.692
|
11.000
|
25.148
|
8.580
|
50.592
|
49.408
|
14.793
|
10.355
|
50.296
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1077.409
|
1269.111
|
1103.587
|
967.774
|
831.339
|
667.593
|
967.587
|
1027.891
|
1254.517
|
1209.696
|
1228.905
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.433
|
-0.528
|
— |
-0.251
|
-0.302
|
0.546
|
0.515
|
— | — | — | — | — | — |
No JSON data available for plots.