Hg_chrom7_TN10mRNA_14117
Organism: Heterodera glycines Gene Locus: chr7:5501933-5503466 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 0.978 | 0.928 | 0.414 | 0.901 | 1.001 | 0.679 | 1.201 | 1.134 | 1.623 | 0.865 | 1.237 | 1.335 | 0.809 | 1.41 | 1.158 | 1.477 | 1.092 | 0.231 | 0.265 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13322
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.746
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
34-55
|
0.968
|
— | — | — | — |
0.000
|
— | — |
0.270
|
0.690
|
0.214
|
0.414
|
0.134
|
0.072
|
0.074
|
0.164
|
0.088
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004584
|
2.000
|
1.000
|
Hsc_gene_19698.t1
|
Hsc_gene_19698.t1
|
— |
Q9UGM6.1 Tryptophan--tRNA ligase, mitochondrial [Homo sapiens]
|
KAH7731608.1 tryptophanyl-tRNA synthetase [Aphelenchus avenae]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004830|GO:0005524|GO:0006418|GO:0006436
|
GO:0005575_0.920|GO:0110165_0.920|GO:0005622_0.771|GO:0016020_0.765|GO:0008150_0.733|GO:0005737_0.704|GO:0009987_0.683|GO:0043226_0.635|GO:0043229_0.634|GO:0043227_0.597|GO:0043231_0.581|GO:0003674_0.509
|
IPR001412+11-20+|IPR002305+5-260+|IPR002306+2-332_5-284_15-31_69-88_146-167_199-209+|IPR014729+6-331+|IPR050203+3-332+
|
— |
PF00579+5-260+tRNA_synthetases_class_I_(W_and_Y)
|
G3DSA:1.10.240.10:FF:000002+190-300+Tryptophan--tRNA_ligase
|
PTHR43766+3-332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
37055.620
|
9.692
|
11.000
|
25.526
|
8.408
|
50.751
|
49.249
|
15.015
|
10.511
|
50.450
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1077.409
|
1269.111
|
1103.587
|
967.774
|
831.339
|
667.593
|
967.587
|
1027.891
|
1254.517
|
1209.696
|
1228.905
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.433
|
-0.528
|
— |
-0.251
|
-0.302
|
0.546
|
0.515
|
— | — | — | — | — | — |
No JSON data available for plots.