Hg_chrom7_TN10mRNA_14118
Organism: Heterodera glycines Gene Locus: chr7:5503809-5505807 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 0.897 | 1.446 | 0.914 | 1.084 | 0.803 | 0.516 | 1.084 | 1.071 | 1.433 | 0.767 | 1.134 | 1.539 | 1.019 | 0.984 | 1.308 | 0.751 | 0.949 | 0.741 | 0.425 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13323
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — |
15-35
|
0.995
|
— | — |
0.000
|
— | — |
0.681
|
0.431
|
0.021
|
0.651
|
0.196
|
0.167
|
0.243
|
0.064
|
0.281
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011298
|
1.000
|
1.000
|
Hsc_gene_19699.t1
|
Hsc_gene_19699.t1
|
— |
P49594.2 Protein phosphatase fem-2 [Caenorhabditis elegans]
|
KAK6100357.1 Protein phosphatase 2C family protein [Brugia pahangi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0006470
|
GO:0005575_0.804|GO:0110165_0.770|GO:0008150_0.762|GO:0009987_0.652|GO:0003674_0.635|GO:0005622_0.605|GO:0016020_0.589|GO:0003824_0.515|GO:0065007_0.504
|
IPR001932+126-401_134-403_136-395_136-403+|IPR015655+135-403+|IPR036457+132-405_133-413+
|
SM00332+126-401+
|
PF00481+136-395+Protein_phosphatase_2C
|
— |
PTHR13832+135-403+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
45979.170
|
4.693
|
-14.500
|
26.506
|
10.120
|
47.229
|
52.771
|
12.048
|
14.458
|
53.012
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
steelblue
|
556.611
|
1287.482
|
649.378
|
565.724
|
438.174
|
394.003
|
976.591
|
614.919
|
223.496
|
420.202
|
335.899
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.216
|
-1.323
|
— |
-0.400
|
— |
1.319
|
0.537
|
0.809
|
— | — | — | — | — |
No JSON data available for plots.