SCN Proteipedia

Hg_chrom7_TN10mRNA_14120

Organism: Heterodera glycines Gene Locus: chr7:5514538-5519209 Feature type: polypeptide

Protein Sequence

Length: 1,047

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.944	0.866	0.92	0.889	1.178	1.469	0.432	1.48	0.849	1.807	0.637	0.955	1.486	0.882	1.345	0.955	0.783	1.085	0.955	0.506	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13325	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.951

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRKPELRRRIQRMAKR,RRKLRKTTSGEAEKMRQRK,RKLRKTTSGEAEKMRQRKN	—	—	—	—	—	—	0.000	—	—	0.561	0.180	0.010	0.492	0.132	0.215	0.118	0.042	0.092	0.077

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011300	1.000	1.000	Hsc_gene_19703.t1	Hsc_gene_19702.t1;Hsc_gene_19703.t1	—	Q9VHM2.3 VPS35 endosomal protein sorting factor-like [Drosophila melanogaster]	KAI1709979.1 vacuolar protein sorting-associated protein 35 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0032456	GO:0008150_0.962\|GO:0005575_0.928\|GO:0110165_0.928\|GO:0009987_0.922\|GO:0016020_0.861\|GO:0005622_0.854\|GO:0043226_0.802\|GO:0071944_0.794\|GO:0051179_0.792\|GO:0005886_0.788\|GO:0006810_0.780\|GO:0043229_0.780\|GO:0051234_0.780\|GO:0005737_0.756\|GO:0043227_0.742\|GO:0051641_0.724\|GO:0043231_0.721\|GO:0051649_0.703\|GO:0016192_0.694\|GO:0046907_0.689\|GO:0051668_0.680\|GO:0048193_0.679\|GO:0016197_0.675\|GO:0098876_0.674\|GO:0006892_0.670\|GO:0006893_0.670\|GO:0032456_0.670\|GO:0005773_0.638\|GO:0012505_0.630\|GO:0031090_0.594\|GO:0031982_0.581\|GO:0098588_0.565\|GO:0031410_0.563\|GO:0097708_0.563\|GO:0099503_0.551\|GO:0030141_0.550\|GO:0005768_0.549\|GO:0012506_0.549\|GO:0030659_0.549\|GO:0030667_0.540\|GO:0070820_0.540\|GO:0101002_0.540\|GO:0101003_0.540	IPR029705+58-830+	—	—	—	PTHR13673+58-830+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	40-155;1047-1047	2.000	1-39;156-1046	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.525	118918.610	6.580	1.500	25.883	11.270	46.800	53.200	13.754	12.130	46.323

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1455.497	2049.736	1537.144	1281.091	1290.377	1311.326	2249.684	1363.732	1498.234	1087.966	1263.795

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.645	-0.815	-0.154	—	—	0.789	—	0.864	—	—	—	—	—

No JSON data available for plots.

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