Hg_chrom7_TN10mRNA_14121
Organism: Heterodera glycines Gene Locus: chr7:5519964-5523549 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 1.459 | 0.963 | 0.068 | 2.386 | 1.659 | 0.747 | 1.863 | 1.438 | 0.821 | 1.159 | 1.384 | 1.035 | 0.792 | 0.6 | 0.616 | 0.707 | 0.802 | 0.452 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13326
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.376
|
0.107
|
0.018
|
0.721
|
0.197
|
0.231
|
0.175
|
0.017
|
0.259
|
0.662
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011301
|
1.000
|
1.000
|
Hsc_gene_19704.t1
|
Hsc_gene_19704.t1
|
— |
P36573.1 32 kDa beta-galactoside-binding lectin [Caenorhabditis elegans]
|
KAI3409900.1 32 kDa beta-galactoside-binding lectin [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0005575_0.790|GO:0110165_0.776|GO:0008150_0.689|GO:0009987_0.620|GO:0016020_0.560|GO:0005622_0.538|GO:0003674_0.501
|
IPR001079+241-374_242-372_242-373_243-374_247-373_380-510_381-508_383-510_387-509_388-509+|IPR013320+239-383_378-509+|IPR044156+242-508+
|
SM00276+241-374_380-510+|SM00908+247-373_387-509+
|
PF00337+242-373_388-509+Galactoside-binding_lectin
|
G3DSA:2.60.120.200:FF:000145+231-377+Galectin|G3DSA:2.60.120.200:FF:000155+379-510+Galectin
|
PTHR11346+242-508+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-278
|
1.000
|
279-510
|
8hgj_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
58198.450
|
4.481
|
-36.500
|
33.922
|
10.980
|
55.294
|
44.706
|
14.314
|
19.608
|
42.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
15099.981
|
25154.065
|
9921.293
|
4433.632
|
4558.109
|
10677.211
|
8704.769
|
46529.070
|
27843.725
|
3937.818
|
14183.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.570
|
-2.642
|
-1.055
|
— |
1.242
|
-0.284
|
2.025
|
-2.278
|
2.708
|
-2.480
|
— | — | — |
No JSON data available for plots.