Hg_chrom7_TN10mRNA_14123
Organism: Heterodera glycines Gene Locus: chr7:5537451-5546008 Feature type: polypeptideProtein Sequence
Length: 1,974
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.73 | 0.848 | 1.142 | 0.437 | 2.001 | 1.429 | 0.663 | 1.292 | 0.822 | 1.109 | 1.174 | 1.55 | 0.985 | 0.857 | 1.375 | 0.926 | 0.739 | 0.722 | 1.169 | 0.73 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13328
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKRR,RRRKRE,RKFAGGKKKGRKGKRSAR,KKSRKFAGGKKKGRKGKRS,KKARDTTKQQQKVKRRKEE,RRVRLFLHPQKEMKPRRER,KKRAEQGFVTFEEDEKKRK,KRAEQGFVTFEEDEKKRKK,KKRKKREGKATIDIKKKYD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.960
|
0.034
|
0.029
|
0.167
|
0.147
|
0.041
|
0.023
|
0.004
|
0.067
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011303
|
1.000
|
1.000
|
Hsc_gene_19707.t1
|
Hsc_gene_19707.t1
|
— |
Q22516.2 Chromodomain-helicase-DNA-binding protein 3 homolog [Caenorhabditis elegans]
|
KAI1709997.1 CHDCT2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0005524|GO:0006338|GO:0140658
|
GO:0005575_0.896|GO:0110165_0.889|GO:0008150_0.859|GO:0005622_0.832|GO:0009987_0.821|GO:0003674_0.735|GO:0016020_0.722|GO:0043226_0.720|GO:0043229_0.704|GO:0005488_0.696|GO:0065007_0.633|GO:0043227_0.630|GO:0050789_0.612|GO:0043231_0.595|GO:0050794_0.590|GO:0005634_0.556|GO:0016043_0.527|GO:0071840_0.527|GO:0008152_0.512|GO:0043170_0.502|GO:0044238_0.501
|
IPR000330+684-978+|IPR000953+422-518_468-525_562-618+|IPR001650+1006-1119_1009-1170_1035-1119+|IPR001965+307-350_372-417+|IPR002464+823-832+|IPR009462+1324-1481_1344-1478+|IPR009463+1243-1308_1247-1302+|IPR011011+302-355_367-431+|IPR012957+1624-1715_1738-1797+|IPR012958+111-162+|IPR013083+278-359_366-430+|IPR014001+677-885_693-877+|IPR016197+420-518_544-614+|IPR019786+308-349+|IPR019787+305-352_308-349_370-419_373-416+|IPR023780+565-614+|IPR027417+665-912_914-1189_922-1150+|IPR038718+677-921+|IPR049730+1005-1130+
|
SM00249+307-350_372-417+|SM00298+422-518_562-618+|SM00487+677-885+|SM00490+1035-1119+|SM01146+1324-1481+|SM01147+1243-1308+
|
PF00176+684-978+SNF2-related_domain|PF00271+1006-1119+Helicase_conserved_C-terminal_domain|PF00385+565-614+Chromo_(CHRromatin_Organisation_MOdifier)_domain|PF00628+308-349_373-416+PHD-finger|PF06461+1344-1478+CHD_subfamily_II,_SANT-like_domain|PF06465+1247-1302+CHD_subfamily_II,_DUF1087|PF08073+111-162+CHDNT_(NUC034)_domain|PF08074+1624-1715_1738-1797+CHDCT2_(NUC038)_domain
|
G3DSA:3.30.40.10:FF:000001+297-355+chromodomain-helicase-DNA-binding_protein_3_isoform_X1|G3DSA:3.40.50.10810:FF:000001+677-921+chromodomain-helicase-DNA-binding_protein_3_isoform_X1|G3DSA:3.40.50.300:FF:000015+922-1150+chromodomain-helicase-DNA-binding_protein_9_isoform_X1
|
PTHR45623+62-1949+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-304;1197-1367;1473-1603;1791-1974
|
3.000
|
305-1196;1368-1472;1604-1790
|
9gd3_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
227552.900
|
5.147
|
-49.500
|
35.360
|
10.132
|
55.572
|
44.428
|
17.072
|
18.288
|
43.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
5785.285
|
10354.921
|
4460.969
|
4570.398
|
4858.720
|
4326.509
|
4156.035
|
3936.648
|
10237.010
|
3883.787
|
6606.597
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.444
|
-1.317
|
0.144
|
— |
-0.153
|
— |
-0.241
|
0.221
|
1.289
|
— | — | — | — |
No JSON data available for plots.