Hg_chrom7_TN10mRNA_14124
Organism: Heterodera glycines Gene Locus: chr7:5546079-5547142 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 1.86 | 1.131 | 1.226 | 1.111 | 0.798 | 0.688 | 1.333 | 0.79 | 1.021 | 0.404 | 1.046 | 0.864 | 0.684 | 1.451 | 1.905 | 0.947 | 0.741 | 0.684 | 0.523 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13329
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — |
40-80
|
0.888
|
— | — |
0.000
|
— | — |
0.192
|
0.419
|
0.018
|
0.462
|
0.272
|
0.354
|
0.466
|
0.091
|
0.675
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011304
|
1.000
|
1.000
|
Hsc_gene_19708.t1
|
Hsc_gene_19708.t1
|
— |
Q9QYK7.1 RING finger protein 11 [Mus musculus]
|
KAI1715839.1 ring finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.867|GO:0005575_0.706|GO:0110165_0.664|GO:0003674_0.634|GO:0009987_0.516|GO:0016020_0.516|GO:0008152_0.508|GO:0043170_0.508
|
IPR001841+128-169_129-169+|IPR013083+110-177+|IPR042981+128-170+|IPR052804+46-183+
|
SM00184+129-169+
|
PF13639+128-169+Ring_finger_domain
|
— |
PTHR46359+46-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-69;197-225
|
1.000
|
70-196
|
5zc4_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
24657.090
|
5.320
|
-4.000
|
25.333
|
8.444
|
55.556
|
44.444
|
12.444
|
12.889
|
59.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
1276.872
|
1222.436
|
1087.330
|
966.690
|
1003.140
|
1316.314
|
1813.668
|
2472.171
|
956.424
|
1163.341
|
1074.662
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.398
|
-0.476
|
— | — |
0.407
|
0.472
|
0.806
|
-0.305
|
— | — | — | — | — |
No JSON data available for plots.