Hg_chrom7_TN10mRNA_14126
Organism: Heterodera glycines Gene Locus: chr7:5549640-5551388 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 1.104 | 0.809 | 0.819 | 1.039 | 0.837 | 0.742 | 1.632 | 1.649 | 1.203 | 0.809 | 1.222 | 1.484 | 0.514 | 1.393 | 1.017 | 0.681 | 1.124 | 0.913 | 0.873 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13331
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.671
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRIR
|
24-45
|
0.942
|
— | — | — | — |
0.000
|
— | — |
0.125
|
0.283
|
0.021
|
0.239
|
0.932
|
0.224
|
0.210
|
0.009
|
0.172
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011306
|
1.000
|
1.000
|
Hsc_gene_19710.t1
|
Hsc_gene_19710.t1
|
— |
Q96NR8.3 Retinol dehydrogenase 12 [Homo sapiens]
|
KAH7707229.1 oxidoreductase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.826|GO:0110165_0.823|GO:0008150_0.802|GO:0016020_0.646|GO:0009987_0.638|GO:0003674_0.605|GO:0005622_0.542|GO:0043226_0.508|GO:0065007_0.503
|
IPR002347+47-64_47-255_125-136_172-188_178-186_211-230_236-253+|IPR036291+44-308+
|
— |
PF00106+47-255+short_chain_dehydrogenase
|
— |
PTHR43157+39-332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-337
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
38066.810
|
8.476
|
10.500
|
26.113
|
12.760
|
45.401
|
54.599
|
15.430
|
10.682
|
47.181
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkturquoise
|
1755.757
|
1648.912
|
1529.697
|
1493.922
|
1865.583
|
2123.730
|
2406.212
|
2335.659
|
2115.963
|
1068.070
|
1517.167
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.337
|
-0.280
|
— |
0.289
|
0.202
|
0.190
|
— | — | — | — | — | — | — |
No JSON data available for plots.