Hg_chrom7_TN10mRNA_14127
Organism: Heterodera glycines Gene Locus: chr7:5551792-5554866 Feature type: polypeptideProtein Sequence
Length: 562
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 1.076 | 1.326 | 0.552 | 1.097 | 1.597 | 0.402 | 1.423 | 1.344 | 1.635 | 0.35 | 1.361 | 1.928 | 0.684 | 1.743 | 1.118 | 0.758 | 0.674 | 1.095 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13332
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.549
|
0.271
|
0.009
|
0.574
|
0.111
|
0.192
|
0.122
|
0.074
|
0.262
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011307
|
1.000
|
1.000
|
Hsc_gene_19711.t1
|
Hsc_gene_19711.t1
|
— | — |
KAI1717375.1 serine/threonine-protein phosphatase 4 regulatory subunit 1 [Ditylenchus destructor]
|
HIS35555
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0009987_0.905|GO:0005575_0.896|GO:0110165_0.894|GO:0003674_0.852|GO:0065007_0.847|GO:0005622_0.839|GO:0050789_0.839|GO:0050794_0.814|GO:0005737_0.777|GO:0005488_0.773|GO:0071840_0.764|GO:0016043_0.759|GO:0032501_0.756|GO:0051179_0.749|GO:0032502_0.746|GO:0048856_0.746|GO:0005515_0.745|GO:0051234_0.735|GO:0048519_0.728|GO:0007275_0.725|GO:0048523_0.717|GO:0051641_0.712|GO:0006996_0.711|GO:0022414_0.697|GO:0051649_0.697|GO:0051128_0.693|GO:0019953_0.689|GO:0061024_0.689|GO:0048285_0.685|GO:0000280_0.684|GO:0007049_0.684|GO:0022402_0.684|GO:0007010_0.682|GO:0007017_0.681|GO:0009790_0.680|GO:0048609_0.680|GO:0051301_0.680|GO:0000278_0.679|GO:0051640_0.679|GO:0051726_0.679|GO:0140014_0.679|GO:1903047_0.679|GO:0007276_0.678|GO:0019899_0.678|GO:0033043_0.678|GO:0051321_0.678|GO:0051656_0.678|GO:0140013_0.678|GO:1903046_0.678|GO:0000226_0.676|GO:0010564_0.676|GO:0051129_0.676|GO:0051276_0.676|GO:2000241_0.676|GO:0000910_0.675|GO:0007163_0.675|GO:0009792_0.675|GO:0090148_0.675|GO:0007059_0.674|GO:0010639_0.674|GO:0098813_0.674|GO:0000022_0.670|GO:0000070_0.670|GO:0000132_0.670|GO:0000212_0.670|GO:0000819_0.670|GO:0007051_0.670|GO:0007052_0.670|GO:0007143_0.670|GO:0007292_0.670|GO:0010948_0.670|GO:0030010_0.670|GO:0032886_0.670|GO:0032887_0.670|GO:0032888_0.670|GO:0033044_0.670|GO:0033045_0.670|GO:0033047_0.670|GO:0033206_0.670|GO:0040001_0.670|GO:0040020_0.670|GO:0040038_0.670|GO:0045132_0.670|GO:0045786_0.670|GO:0045835_0.670|GO:0051231_0.670|GO:0051232_0.670|GO:0051293_0.670|GO:0051294_0.670|GO:0051445_0.670|GO:0051447_0.670|GO:0051653_0.670|GO:0051783_0.670|GO:0051784_0.670|GO:0051983_0.670|GO:0061640_0.670|GO:1902119_0.670|GO:1902120_0.670|GO:1902850_0.670|GO:2000242_0.670|GO:0098772_0.669|GO:0030234_0.662|GO:0140677_0.661|GO:0008047_0.654|GO:0019904_0.654|GO:0019208_0.650|GO:0019211_0.650|GO:0019888_0.650|GO:0019902_0.650|GO:0019903_0.650|GO:0072542_0.650
|
IPR011989+127-547+|IPR016024+20-545+|IPR051023+240-546+
|
— | — | — |
PTHR10648+240-546+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-562
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.621
|
65436.230
|
5.495
|
-9.000
|
27.580
|
12.811
|
50.890
|
49.110
|
13.701
|
13.879
|
43.060
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
yellow
|
1020.584
|
670.888
|
833.198
|
881.890
|
1077.808
|
953.698
|
1466.297
|
1053.100
|
709.040
|
1331.947
|
1064.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.258
|
0.191
|
0.257
|
-0.162
|
0.629
|
— |
0.618
|
— | — | — | — | — |
No JSON data available for plots.