Hg_chrom7_TN10mRNA_14129
Organism: Heterodera glycines Gene Locus: chr7:5558348-5562141 Feature type: polypeptideProtein Sequence
Length: 429
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 1.084 | 0.763 | 1.125 | 0.855 | 0.777 | 0.555 | 2.098 | 1.14 | 1.449 | 0.706 | 1.234 | 1.748 | 1.166 | 1.57 | 0.932 | 0.917 | 0.989 | 1.076 | 0.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13334
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_19712
|
— |
10-Pre_planta
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
9-45
|
0.994
|
— | — |
0.000
|
— | — |
0.210
|
0.116
|
0.012
|
0.342
|
0.594
|
0.476
|
0.441
|
0.045
|
0.658
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004585
|
1.000
|
2.000
|
Hsc_gene_19712.t1;Hsc_gene_19712.t2
|
Hsc_gene_19712.t1;Hsc_gene_19712.t2;Hsc_gene_19712.t3
|
— |
O16262.3 Protein nipi-4 [Caenorhabditis elegans]
|
KAI6235334.1 Ephrin type-B receptor 1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.935|GO:0009987_0.801|GO:0005575_0.738|GO:0110165_0.735|GO:0065007_0.729|GO:0050789_0.715|GO:0050794_0.670|GO:0050896_0.659|GO:0032501_0.609|GO:0003674_0.608|GO:0032502_0.605|GO:0048856_0.605|GO:0051716_0.533|GO:0003824_0.527|GO:0071944_0.521|GO:0016020_0.517|GO:0007154_0.508|GO:0023052_0.508|GO:0007275_0.505|GO:0008152_0.504
|
IPR000719+107-386+|IPR001245+112-376_190-203_242-260_309-331+|IPR011009+112-391+|IPR050198+104-377+
|
— |
PF07714+112-376+Protein_tyrosine_and_serine/threonine_kinase
|
— |
PTHR24418+104-377+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-429
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
49005.730
|
9.068
|
22.000
|
25.874
|
13.753
|
45.688
|
54.312
|
16.550
|
9.324
|
47.786
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1180.554
|
1284.099
|
1258.992
|
1097.647
|
1025.884
|
1027.352
|
1021.750
|
1088.234
|
501.151
|
1862.579
|
1279.110
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.258
|
-0.363
|
— |
-0.130
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.