Hg_chrom7_TN10mRNA_14131
Organism: Heterodera glycines Gene Locus: chr7:5574529-5576916 Feature type: polypeptideProtein Sequence
Length: 578
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.845 | 1.006 | 1.793 | 0.358 | 2.22 | 1.198 | 0.433 | 0.779 | 0.769 | 0.842 | 1.416 | 1.323 | 1.105 | 0.532 | 1.871 | 1.038 | 0.567 | 0.55 | 0.665 | 0.56 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13336
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.600
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRNGPMLKVKRFNRK,RKQEEAKRRKRRRGD,RKKEHKVQIDDRFKKL,PKRKTKFQLYLERKKQLKQERKQEEAKRRKRRRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.803
|
0.103
|
0.005
|
0.161
|
0.021
|
0.006
|
0.058
|
0.003
|
0.029
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004586
|
2.000
|
1.000
|
Hsc_gene_19714.t1
|
Hsc_gene_19714.t1
|
— |
O74828.1 Pre-rRNA-processing protein esf1 [Schizosaccharomyces pombe 972h-]
|
KAF7633354.1 NUC153 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006364
|
GO:0005575_0.938|GO:0110165_0.937|GO:0003674_0.858|GO:0005488_0.858|GO:0097159_0.742|GO:0003676_0.728|GO:0003723_0.718|GO:0005622_0.617|GO:0008150_0.582|GO:0043226_0.568|GO:0016020_0.555|GO:0009987_0.551|GO:0043229_0.548|GO:0043228_0.502|GO:0043232_0.502
|
IPR012580+531-553+|IPR039754+1-507+
|
— |
PF08159+531-553+NUC153_domain
|
— |
PTHR12202+1-507+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-177;373-578
|
1.000
|
178-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
67536.460
|
4.828
|
-22.500
|
43.253
|
8.304
|
62.976
|
37.024
|
20.069
|
23.183
|
43.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1948.110
|
1506.418
|
1693.505
|
1823.922
|
1841.207
|
1469.426
|
1369.875
|
1448.513
|
3865.377
|
1441.621
|
2480.374
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.139
|
0.216
|
— |
-0.311
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.