Hg_chrom7_TN10mRNA_14132
Organism: Heterodera glycines Gene Locus: chr7:5576815-5580299 Feature type: polypeptideProtein Sequence
Length: 570
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.02 | 1.428 | 1.212 | 0.665 | 1.257 | 1.305 | 0.313 | 1.053 | 1.481 | 1.517 | 1.063 | 2.477 | 1.267 | 0.472 | 1.11 | 0.702 | 0.69 | 0.665 | 0.81 | 0.877 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13337
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
10-42
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.346
|
0.711
|
0.035
|
0.426
|
0.265
|
0.093
|
0.103
|
0.353
|
0.135
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011308
|
1.000
|
1.000
|
Hsc_gene_19715.t1
|
— | — | — |
KAI3409837.1 TOM (translocase of outer membrane) complex component [Globodera pallida]
|
XP_037142055
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.948|GO:0005575_0.909|GO:0110165_0.903|GO:0009987_0.901|GO:0003674_0.851|GO:0005622_0.842|GO:0016020_0.822|GO:0065007_0.818|GO:0050789_0.799|GO:0043226_0.788|GO:0008152_0.787|GO:0005737_0.786|GO:0005488_0.783|GO:0050896_0.782|GO:0050794_0.779|GO:0051179_0.775|GO:0043229_0.767|GO:0006810_0.761|GO:0051234_0.761|GO:0044237_0.759|GO:0009058_0.752|GO:0032501_0.752|GO:0043170_0.742|GO:0043227_0.734|GO:0044249_0.734|GO:0051641_0.729|GO:0048518_0.725|GO:0009059_0.724|GO:0043231_0.722|GO:0006950_0.721|GO:0048522_0.716|GO:0010467_0.712|GO:0019222_0.711|GO:0031323_0.706|GO:0033036_0.704|GO:0060255_0.704|GO:0070727_0.701|GO:0008104_0.698|GO:0048583_0.697|GO:0009889_0.696|GO:0009893_0.696|GO:0031326_0.696|GO:0051239_0.696|GO:0010556_0.694|GO:0071705_0.694|GO:0010468_0.693|GO:0044419_0.693|GO:0009605_0.691|GO:0045184_0.691|GO:0010604_0.689|GO:0055085_0.689|GO:0031325_0.688|GO:0008219_0.687|GO:0009607_0.687|GO:0012501_0.687|GO:0015031_0.687|GO:0043207_0.686|GO:0051707_0.686|GO:0002376_0.685|GO:0009891_0.685|GO:0043067_0.685|GO:0006915_0.684|GO:0006952_0.684|GO:0031328_0.684|GO:0048584_0.684|GO:0010557_0.683|GO:0042981_0.683|GO:0098542_0.682|GO:0010628_0.681|GO:0051240_0.681|GO:0080134_0.681|GO:0006955_0.678|GO:0045087_0.678|GO:0140546_0.678|GO:0002682_0.677|GO:0002684_0.677|GO:0031347_0.677|GO:0032101_0.676|GO:0032103_0.676|GO:0050776_0.676|GO:0050778_0.676|GO:0001816_0.675|GO:0001817_0.675|GO:0002831_0.675|GO:0031349_0.675|GO:0002833_0.674|GO:0009615_0.674|GO:0045088_0.674|GO:0045089_0.674|GO:0001819_0.670|GO:0002218_0.670|GO:0002230_0.670|GO:0002253_0.670|GO:0032479_0.670|GO:0032481_0.670|GO:0032606_0.670|GO:0032608_0.670|GO:0032648_0.670|GO:0032728_0.670|GO:0050688_0.670|GO:0050691_0.670|GO:0051607_0.670|GO:0071806_0.670|GO:0098586_0.670|GO:0005215_0.659|GO:0022857_0.658|GO:0060090_0.657|GO:0008320_0.650|GO:0022884_0.650|GO:0140318_0.650|GO:0031090_0.598|GO:0031982_0.585|GO:0005576_0.574|GO:0005615_0.573|GO:0043230_0.569|GO:0065010_0.567|GO:0070062_0.567|GO:1903561_0.567|GO:0005739_0.560|GO:0031967_0.560|GO:0005740_0.549|GO:0031966_0.549
|
IPR011990+37-160_43-392_270-555_345-532+|IPR019734+82-115_116-149_355-388_431-464_504-537+
|
SM00028+82-115_116-149_355-388_431-464_504-537+
|
— | — |
PTHR46208+89-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-570
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
65922.890
|
5.984
|
-4.000
|
28.772
|
10.702
|
49.123
|
50.877
|
14.561
|
14.211
|
42.105
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1942.550
|
2013.015
|
2103.763
|
2108.033
|
2317.474
|
2141.129
|
2084.418
|
1467.229
|
2238.859
|
1481.362
|
1806.004
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.166
|
— |
0.111
|
0.105
|
— | — |
-0.651
|
0.648
|
— | — | — | — | — |
No JSON data available for plots.