Hg_chrom7_TN10mRNA_14133
Organism: Heterodera glycines Gene Locus: chr7:5580725-5583254 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.133 | 0.716 | 0.653 | 0.884 | 0.855 | 0.789 | 0.672 | 2.308 | 0.57 | 1.94 | 0.855 | 1.81 | 2.137 | 0.592 | 0.523 | 0.733 | 0.925 | 0.932 | 1.578 | 1.357 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13338
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — |
27-58
|
0.974
|
— | — | — | — |
0.000
|
— | — |
0.367
|
0.388
|
0.052
|
0.074
|
0.795
|
0.170
|
0.115
|
0.006
|
0.245
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011309
|
1.000
|
1.000
|
Hsc_gene_19717.t1
|
Hsc_gene_19716.t1;Hsc_gene_19717.t1
|
— |
O14735.1 CDP-diacylglycerol--inositol 3-phosphatidyltransferase [Homo sapiens]
|
KAH7697145.1 Protein PISY-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008654|GO:0016020|GO:0016780
|
GO:0008150_0.821|GO:0003674_0.813|GO:0009987_0.771|GO:0003824_0.705|GO:0005575_0.693|GO:0110165_0.689|GO:0016740_0.651|GO:0016020_0.614|GO:0016772_0.607|GO:0016780_0.600|GO:0017169_0.596|GO:0008152_0.580|GO:0071944_0.576|GO:0005886_0.572|GO:0005622_0.564|GO:0005737_0.564|GO:0044238_0.555|GO:0044237_0.554|GO:0009058_0.540|GO:0003881_0.511|GO:0006793_0.508|GO:0006796_0.506|GO:0006629_0.501
|
IPR000462+4-108+|IPR014387+1-182+|IPR043130+1-173+|IPR048254+24-46+
|
— |
PF01066+4-108+CDP-alcohol_phosphatidyltransferase
|
— |
PTHR15362+9-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
22184.810
|
7.180
|
3.500
|
21.538
|
18.974
|
38.462
|
61.538
|
12.821
|
8.718
|
44.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
566.780
|
1103.876
|
791.382
|
557.076
|
494.505
|
492.578
|
635.449
|
570.748
|
175.138
|
606.206
|
421.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.709
|
-1.124
|
-0.398
|
-0.203
|
— |
0.377
|
— |
0.297
|
— | — | — | — | — |
No JSON data available for plots.