Hg_chrom7_TN10mRNA_14135
Organism: Heterodera glycines Gene Locus: chr7:5584791-5587347 Feature type: polypeptideProtein Sequence
Length: 380
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.704 | 0.673 | 0.861 | 0.544 | 1.228 | 1.012 | 1.034 | 1.316 | 1.637 | 1.138 | 0.957 | 1.238 | 1.462 | 1.012 | 1.128 | 0.865 | 0.863 | 1.156 | 0.81 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13340
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.819
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.584
|
0.318
|
0.116
|
0.698
|
0.101
|
0.209
|
0.217
|
0.110
|
0.181
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002422
|
2.000
|
2.000
|
Hsc_gene_19719.t1;Hsc_gene_19719.t2
|
Hsc_gene_19719.t1;Hsc_gene_19719.t2
|
— |
P61162.1 Alpha-centractin [Canis lupus familiaris]
|
KAI3409840.1 Alpha-centractin [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.911|GO:0110165_0.898|GO:0005622_0.790|GO:0005737_0.707|GO:0016020_0.689|GO:0043226_0.673|GO:0043229_0.660|GO:0008150_0.615|GO:0043227_0.521|GO:0009987_0.519
|
IPR004000+11-379_11-380_12-371_32-41_55-66_67-89_122-135_147-166_241-257+|IPR020902+111-123+|IPR043129+11-160_153-380+
|
SM00268+11-380+
|
PF00022+11-379+Actin
|
G3DSA:3.30.420.40:FF:000188+2-168+Actin_like_6B|G3DSA:3.90.640.10:FF:000008+187-276+alpha-centractin_isoform_X1
|
PTHR11937+12-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-380
|
9hhl_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
42257.630
|
7.213
|
4.000
|
26.579
|
10.789
|
44.737
|
55.263
|
14.474
|
12.105
|
48.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
midnightblue
|
883.516
|
752.825
|
746.617
|
853.296
|
1100.612
|
1065.698
|
1651.960
|
1289.148
|
386.003
|
778.323
|
610.186
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.241
|
— |
0.301
|
0.335
|
— |
0.644
|
— |
0.501
|
— | — | — | — | — |
No JSON data available for plots.