SCN Proteipedia

Hg_chrom7_TN10mRNA_14137

Organism: Heterodera glycines Gene Locus: chr7:5587624-5589434 Feature type: polypeptide

Protein Sequence

Length: 395

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.854	1.119	0.276	0.436	1.857	1.428	0.874	1.646	0.506	0.924	0.882	1.042	0.914	1.558	1.55	1.447	1.121	0.46	0.779	0.298	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13341	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.715

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	RGRGPGSKSYRRRKA,KKGEKSEHFGEEQRKRWE	—	—	—	—	—	—	0.000	—	—	0.816	0.133	0.014	0.264	0.068	0.052	0.155	0.026	0.034	0.048

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011311	1.000	1.000	Hsc_gene_19720.t1	—	—	Q6R3Q6.1 Brain-specific homeobox protein homolog [Danio rerio]	OUC46455.1 putative homeobox domain protein [Trichinella nativa]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.894\|GO:0009987_0.808\|GO:0065007_0.737\|GO:0032502_0.734\|GO:0048856_0.734\|GO:0050789_0.733\|GO:0032501_0.726\|GO:0050794_0.726\|GO:0005575_0.679\|GO:0007275_0.665\|GO:0110165_0.651\|GO:0048731_0.628\|GO:0005622_0.604\|GO:0043226_0.602\|GO:0008152_0.596\|GO:0009058_0.596\|GO:0009059_0.596\|GO:0010467_0.596\|GO:0043170_0.596\|GO:0044237_0.596\|GO:0044249_0.596\|GO:0043229_0.594\|GO:0019222_0.589\|GO:0031323_0.589\|GO:0003674_0.588\|GO:0005488_0.588\|GO:0060255_0.578\|GO:0009889_0.570\|GO:0031326_0.570\|GO:0010468_0.567\|GO:0010556_0.567\|GO:0003676_0.563\|GO:0097159_0.563\|GO:0006139_0.557\|GO:0016070_0.557\|GO:0044238_0.557\|GO:0090304_0.557\|GO:0032774_0.556\|GO:0034654_0.556\|GO:0141187_0.556\|GO:0080090_0.552\|GO:0016020_0.547\|GO:0006351_0.534\|GO:0019219_0.531\|GO:0051252_0.531\|GO:0006355_0.523\|GO:2001141_0.523\|GO:0030154_0.518\|GO:0048869_0.518	IPR001356+297-357_299-361_300-356_300-358+\|IPR009057+286-357+\|IPR017970+332-355+\|IPR020479+321-332_336-346_346-355+\|IPR050848+84-356+	SM00389+299-361+	PF00046+300-356+Homeodomain	—	PTHR24333+84-356+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-395	0.000	—	2dmt_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.922	43837.650	8.371	9.500	29.367	8.608	56.709	43.291	16.709	12.658	50.380

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	67.343	96.820	100.126	28.704	16.343	14.094	49.216	44.731	179.123	29.022	93.351

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.891	-1.691	-0.845	—	1.817	1.568	—	—	—	—	—	—

No JSON data available for plots.

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