SCN Proteipedia

Hg_chrom7_TN10mRNA_14140

Organism: Heterodera glycines Gene Locus: chr7:5590657-5592294 Feature type: polypeptide

Protein Sequence

Length: 289

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.885	0.724	1.195	0.358	0.98	0.532	0.659	0.865	1.077	1.263	0.786	0.814	1.346	1.331	1.554	1.186	1.248	0.996	0.532	0.916	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13343	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.739

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.398	0.083	0.006	0.515	0.078	0.257	0.267	0.049	0.254	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011312	1.000	1.000	Hsc_gene_19722.t1	Hsc_gene_19722.t1	—	—	KAI1715789.1 multivesicular body subunit 12 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000813	GO:0008150_0.922\|GO:0005575_0.887\|GO:0110165_0.878\|GO:0003674_0.863\|GO:0009987_0.861\|GO:0005622_0.824\|GO:0016020_0.806\|GO:0008152_0.804\|GO:0065007_0.788\|GO:0044238_0.782\|GO:0005737_0.774\|GO:0050789_0.774\|GO:0005488_0.773\|GO:0043226_0.770\|GO:0050794_0.764\|GO:0050896_0.764\|GO:0043170_0.754\|GO:0043229_0.753\|GO:0051716_0.745\|GO:0043227_0.728\|GO:0043231_0.728\|GO:0019538_0.714\|GO:0051179_0.710\|GO:0007154_0.708\|GO:0051234_0.708\|GO:0006810_0.705\|GO:0023052_0.705\|GO:0007165_0.700\|GO:0009056_0.699\|GO:0010646_0.691\|GO:0023051_0.690\|GO:0048583_0.690\|GO:0009966_0.686\|GO:0009057_0.685\|GO:0007166_0.682\|GO:0006508_0.678\|GO:0016192_0.678\|GO:0030163_0.677\|GO:0071944_0.675\|GO:0051603_0.674\|GO:0016032_0.673\|GO:0005773_0.670\|GO:0006511_0.670\|GO:0007039_0.670\|GO:0007167_0.670\|GO:0007169_0.670\|GO:0007173_0.670\|GO:0019058_0.670\|GO:0019068_0.670\|GO:0019075_0.670\|GO:0019941_0.670\|GO:0038127_0.670\|GO:0042058_0.670\|GO:0043162_0.670\|GO:0043632_0.670\|GO:0046755_0.670\|GO:0071985_0.670\|GO:1901184_0.670\|GO:0005886_0.663\|GO:0008289_0.657\|GO:0005634_0.617\|GO:0005829_0.616\|GO:0032991_0.616\|GO:0005576_0.581\|GO:0012505_0.578\|GO:0031090_0.574\|GO:0005615_0.570\|GO:0031982_0.564\|GO:0043230_0.559\|GO:0065010_0.559\|GO:1903561_0.559\|GO:0070062_0.557\|GO:0098588_0.555\|GO:0097708_0.553\|GO:0098796_0.553\|GO:0031410_0.552\|GO:0005768_0.545\|GO:0000813_0.540\|GO:0005769_0.540\|GO:0005770_0.540\|GO:0010008_0.540\|GO:0012506_0.540\|GO:0030659_0.540\|GO:0036452_0.540	IPR018798+14-281+\|IPR023341+12-162+\|IPR040297+7-284+	—	PF10240+14-281+Multivesicular_body_subunit_12	G3DSA:2.100.10.50:FF:000002+12-167+Multivesicular_body_subunit_12B	PTHR31547+7-284+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	194-242	2.000	1-193;243-289	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.766	32231.630	7.809	3.500	26.990	10.381	48.097	51.903	14.533	12.457	53.287

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	lightcyan	975.958	856.361	684.418	797.228	1033.559	1074.291	1639.212	1263.561	566.205	1089.428	865.190

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.553	-0.240	0.329	0.343	—	0.621	—	0.518	—	—	—	—	—

No JSON data available for plots.

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