Hg_chrom7_TN10mRNA_14144
Organism: Heterodera glycines Gene Locus: chr7:5610645-5621606 Feature type: polypeptideProtein Sequence
Length: 1,639
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.355 | 1.05 | 0.699 | 0.337 | 0.956 | 3.661 | 0.763 | 1.8 | 0.556 | 0.94 | 0.555 | 2.118 | 0.508 | 1.068 | 1.108 | 1.072 | 1.06 | 0.573 | 0.282 | 0.395 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13347
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRTPSSLDGDRTTRR,RREQLVAFYYLWKKSRD,RRSTPLRNATKSRKRAHR,KRNQAALIAAGTAAARRIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.945
|
0.044
|
0.017
|
0.237
|
0.035
|
0.010
|
0.016
|
0.003
|
0.051
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011316
|
1.000
|
1.000
|
Hsc_gene_19728.t1
|
Hsc_gene_19728.t1
|
— |
Q09228.2 Egg-laying defective protein 27 [Caenorhabditis elegans]
|
KAH7716897.1 GATA zinc finger family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003682|GO:0006355|GO:0043565
|
GO:0005575_0.933|GO:0110165_0.930|GO:0005622_0.879|GO:0016020_0.853|GO:0008150_0.827|GO:0043226_0.827|GO:0043229_0.807|GO:0009987_0.798|GO:0003674_0.770|GO:0005488_0.770|GO:0043227_0.765|GO:0005634_0.746|GO:0043231_0.746|GO:0065007_0.743|GO:0050789_0.736|GO:0050794_0.731|GO:0005515_0.690|GO:0008152_0.660|GO:0019222_0.660|GO:0031323_0.660|GO:0044237_0.660|GO:0044238_0.659|GO:0080090_0.659|GO:0043170_0.652|GO:0060255_0.652|GO:0009058_0.640|GO:0009059_0.640|GO:0009889_0.640|GO:0010556_0.640|GO:0031326_0.640|GO:0044249_0.640|GO:0032501_0.635|GO:0010467_0.633|GO:0010468_0.633|GO:0006139_0.629|GO:0034654_0.629|GO:0090304_0.629|GO:0141187_0.629|GO:0016070_0.627|GO:0016043_0.625|GO:0071840_0.625|GO:0019219_0.623|GO:0051252_0.623|GO:0032774_0.620|GO:0006351_0.608|GO:0006355_0.599|GO:2001141_0.599|GO:0032502_0.543|GO:0048856_0.543|GO:0007275_0.518|GO:0050896_0.507
|
IPR000679+561-612_561-622_566-609_567-601+|IPR000949+293-395_295-343_295-346+|IPR001025+158-292_159-290+|IPR017884+406-452+|IPR040138+174-777+|IPR043151+134-320+
|
SM00401+561-612+|SM00439+158-292+|SM01189+295-346+
|
PF00320+567-601+GATA_zinc_finger|PF01426+159-290+BAH_domain|PF01448+295-343+ELM2_domain
|
G3DSA:1.10.10.60:FF:000012+402-464+Metastasis-associated_1_family,_member_3|G3DSA:2.30.30.490:FF:000023+142-291+Egg-laying_defective_protein_27
|
PTHR10865+174-777+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-144;461-515;605-1639
|
2.000
|
145-460;516-604
|
2yqk_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.722
|
179545.020
|
7.237
|
21.500
|
22.270
|
7.138
|
55.034
|
44.966
|
12.691
|
9.579
|
50.702
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4186.684
|
12526.597
|
4270.759
|
3954.076
|
3186.798
|
3032.582
|
2953.528
|
3347.562
|
3398.378
|
3290.995
|
3337.016
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.781
|
-1.801
|
— |
-0.343
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.