SCN Proteipedia

Hg_chrom7_TN10mRNA_14145

Organism: Heterodera glycines Gene Locus: chr7:5624024-5627648 Feature type: polypeptide

Protein Sequence

Length: 534

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.631	0.61	0.885	0.258	1.935	1.392	1.248	0.655	0.916	1.164	1.617	1.322	0.988	0.9	1.223	0.642	0.767	0.851	0.72	0.551	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13348	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.988

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRLKKKKT,RKRGGEREEEEEEKERKT,RKTDREKSGKSKTKGKSK,KRGGEREEEEEEKERKTDR	—	—	—	—	—	—	0.000	—	—	0.212	0.035	0.018	0.368	0.514	0.433	0.497	0.157	0.728	0.117

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011317	1.000	1.000	Hsc_gene_19729.t1	Hsc_gene_19729.t1	—	P34693.1 Synaptotagmin-1 [Caenorhabditis elegans]	KAI3409850.1 DNA-binding protein snt1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020	GO:0005575_0.887\|GO:0110165_0.887\|GO:0008150_0.826\|GO:0016020_0.810\|GO:0009987_0.789\|GO:0005622_0.708\|GO:0043226_0.708\|GO:0065007_0.705\|GO:0050789_0.685\|GO:0071944_0.678\|GO:0005886_0.675\|GO:0003674_0.670\|GO:0043229_0.669\|GO:0005488_0.650\|GO:0043227_0.650\|GO:0071840_0.608\|GO:0050794_0.606\|GO:0043231_0.603\|GO:0051179_0.596\|GO:0016043_0.595\|GO:0005737_0.590\|GO:0006810_0.582\|GO:0051234_0.582\|GO:0005515_0.553\|GO:0007154_0.503	IPR000008+245-364_260-365_261-363_277-289_304-317_328-336_378-511_393-498_394-508+\|IPR001565+382-397_397-410_454-469_474-484+\|IPR035892+230-373_240-372_374-523_379-515+	SM00239+261-363_394-508+	PF00168+260-365_393-498+C2_domain	G3DSA:2.60.40.150:FF:000007+371-525+Synaptotagmin_1\|G3DSA:2.60.40.150:FF:000016+231-370+Synaptotagmin_1	PTHR10024+38-514+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-138;507-534	1.000	139-506	2r83_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.709	59909.110	7.768	4.500	34.457	7.678	51.685	48.315	17.978	16.479	43.633

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	orange	1082.254	1292.404	2245.477	1071.280	502.190	456.956	1038.544	1301.806	1956.191	301.972	1010.923

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.568	-0.408	-0.959	-1.125	—	1.195	1.409	—	2.583	—	—	—	—

No JSON data available for plots.

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