SCN Proteipedia

Hg_chrom7_TN10mRNA_14146

Organism: Heterodera glycines Gene Locus: chr7:5628090-5631213 Feature type: polypeptide

Protein Sequence

Length: 673

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.313	1.348	0.432	0.256	1.114	2.743	1.221	2.526	0.726	0.743	0.608	1.573	0.495	1.372	0.97	0.807	0.999	0.585	0.114	0.656	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13349	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKAATMRERRRLRKV,KKTKYSVERRKAATMRERR,PRGHKQSKGRNGGGTIGRPPGSGKSAGGGRGRGNGPN	—	—	—	—	—	—	0.000	—	—	0.821	0.132	0.022	0.393	0.060	0.035	0.069	0.006	0.151	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011318	1.000	1.000	Hsc_gene_19730.t1	Hsc_gene_19730.t1	—	P22980.2 Myoblast determination protein 1 homolog [Caenorhabditis elegans]	KAH7699844.1 helix-loop-helix DNA-binding domain-containing protein, partial [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006355\|GO:0007517\|GO:0046983	GO:0008150_0.958\|GO:0032502_0.816\|GO:0048856_0.816\|GO:0005575_0.789\|GO:0009987_0.740\|GO:0110165_0.740\|GO:0003674_0.721\|GO:0005488_0.703\|GO:0005622_0.676\|GO:0065007_0.653\|GO:0016020_0.652\|GO:0050789_0.645\|GO:0043226_0.633\|GO:0043229_0.617\|GO:0097159_0.602\|GO:0050794_0.595\|GO:0003676_0.592\|GO:0048513_0.559\|GO:0043227_0.556\|GO:0008152_0.541\|GO:0043231_0.541\|GO:0044238_0.541\|GO:0043170_0.539\|GO:0005634_0.538\|GO:0032501_0.534\|GO:0044237_0.531\|GO:0019222_0.528\|GO:0031323_0.525\|GO:0060255_0.525\|GO:0009058_0.523\|GO:0009059_0.523\|GO:0010467_0.523\|GO:0044249_0.523\|GO:0080090_0.523\|GO:0061061_0.514\|GO:0006139_0.509\|GO:0009889_0.509\|GO:0010556_0.509\|GO:0031326_0.509\|GO:0010468_0.505\|GO:0016070_0.504\|GO:0090304_0.504\|GO:0032774_0.502\|GO:0034654_0.502\|GO:0141187_0.502	IPR011598+340-391_341-392_346-397+\|IPR036638+331-396_340-410+\|IPR039704+332-418+	SM00353+346-397+	PF00010+341-392+Helix-loop-helix_DNA-binding_domain	G3DSA:4.10.280.10:FF:000005+331-397+Myogenic_factor	PTHR11534+332-418+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-14;120-372;450-673	2.000	15-119;373-449	1mdy_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.858	72452.020	7.513	15.000	22.883	9.212	51.114	48.886	13.819	9.064	53.195

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	729.374	2720.160	2081.940	477.613	222.755	300.907	198.143	1402.828	307.752	183.568	236.790

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.615	-2.647	-2.016	-1.132	0.449	-0.593	2.125	-2.685	—	—	—	—	—

No JSON data available for plots.

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