Hg_chrom7_TN10mRNA_14147
Organism: Heterodera glycines Gene Locus: chr7:5633317-5636574 Feature type: polypeptideProtein Sequence
Length: 571
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 0.652 | 0.796 | 0.664 | 0.846 | 1.078 | 0.605 | 2.014 | 1.557 | 1.799 | 0.371 | 1.648 | 2.092 | 1.111 | 1.573 | 0.951 | 0.66 | 0.77 | 1.751 | 0.464 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13350
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.597
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.092
|
0.294
|
0.017
|
0.114
|
0.944
|
0.156
|
0.247
|
0.182
|
0.160
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011319
|
1.000
|
1.000
|
Hsc_gene_19732.t1
|
Hsc_gene_19732.t1
|
— |
P20813.1 Cytochrome P450 2B6 [Homo sapiens]
|
KAI1721902.1 cytochrome p450 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.793|GO:0003674_0.713|GO:0003824_0.594|GO:0005575_0.545|GO:0110165_0.543|GO:0009987_0.524
|
IPR001128+96-562_378-395_431-442_508-517_517-528+|IPR002401+127-146_151-172_249-267_367-384_387-413_430-448_471-495_507-517_517-540+|IPR017972+510-519+|IPR036396+89-570_96-568+|IPR050182+76-545+
|
— |
PF00067+96-562+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000036+89-569+CYtochrome_P450_family
|
PTHR24300+76-545+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-571
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
65866.790
|
8.172
|
15.500
|
23.643
|
15.412
|
41.331
|
58.669
|
14.186
|
9.457
|
42.032
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
504.767
|
116.722
|
159.524
|
125.072
|
318.549
|
487.627
|
366.163
|
137.980
|
121.276
|
1475.535
|
895.139
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.240
|
1.317
|
0.630
|
-0.403
|
-1.931
|
1.552
|
— | — | — | — | — |
No JSON data available for plots.