Hg_chrom7_TN10mRNA_14149
Organism: Heterodera glycines Gene Locus: chr7:5638979-5640156 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.979 | 1.469 | 1.148 | 0.907 | 1.93 | 1.484 | 0.877 | 0.526 | 0.819 | 0.996 | 0.478 | 1.238 | 0.585 | 0.709 | 0.967 | 1.504 | 0.949 | 0.638 | 0.405 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13352
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.679
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.814
|
0.276
|
0.021
|
0.592
|
0.082
|
0.140
|
0.118
|
0.021
|
0.105
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011321
|
1.000
|
1.000
|
Hsc_gene_19734.t1
|
Hsc_gene_19734.t1
|
— |
Q9V8F3.1 Protein GSKIP homolog [Drosophila melanogaster]
|
KAI1721900.1 GSK3-beta interaction protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0060828
|
GO:0008150_0.941|GO:0005575_0.906|GO:0110165_0.902|GO:0009987_0.887|GO:0065007_0.868|GO:0050789_0.857|GO:0005622_0.851|GO:0050794_0.833|GO:0003674_0.827|GO:0005488_0.827|GO:0005515_0.817|GO:0016020_0.812|GO:0050896_0.792|GO:0005737_0.775|GO:0043226_0.775|GO:0051716_0.767|GO:0008152_0.766|GO:0048518_0.764|GO:0043170_0.762|GO:0043229_0.760|GO:0048522_0.758|GO:0019222_0.755|GO:0044238_0.755|GO:0031323_0.751|GO:0044237_0.751|GO:0023052_0.747|GO:0060255_0.745|GO:0007154_0.743|GO:0048519_0.743|GO:0080090_0.741|GO:0007165_0.731|GO:0043227_0.731|GO:0048523_0.731|GO:0019538_0.726|GO:0043231_0.711|GO:0010646_0.710|GO:0048583_0.708|GO:0023051_0.707|GO:0009892_0.702|GO:0009966_0.701|GO:0051246_0.700|GO:0010605_0.699|GO:0019899_0.698|GO:0031324_0.697|GO:0043412_0.697|GO:0008219_0.696|GO:0035556_0.696|GO:0036211_0.696|GO:0065009_0.695|GO:0012501_0.694|GO:0006915_0.692|GO:0010647_0.692|GO:0003824_0.691|GO:0048584_0.691|GO:0050790_0.691|GO:0098772_0.691|GO:0006793_0.690|GO:0007166_0.690|GO:0023056_0.690|GO:0006796_0.689|GO:0009967_0.685|GO:0031399_0.682|GO:0051248_0.682|GO:0001932_0.679|GO:0006468_0.679|GO:0016310_0.679|GO:0019220_0.679|GO:0042325_0.679|GO:0044092_0.679|GO:0051174_0.679|GO:0097190_0.678|GO:0010563_0.677|GO:0016740_0.677|GO:0045936_0.677|GO:0051338_0.677|GO:0004672_0.676|GO:0016301_0.676|GO:0016772_0.676|GO:0016773_0.676|GO:0042326_0.676|GO:0043086_0.676|GO:0043549_0.676|GO:0045859_0.676|GO:0140096_0.676|GO:0001933_0.675|GO:0016055_0.675|GO:0030111_0.675|GO:0031400_0.675|GO:0097193_0.674|GO:0030234_0.673|GO:0060070_0.673|GO:0060828_0.673|GO:0006469_0.670|GO:0008631_0.670|GO:0030177_0.670|GO:0033673_0.670|GO:0051348_0.670|GO:0090263_0.670|GO:0005634_0.666|GO:0019900_0.660|GO:0140678_0.659|GO:0004857_0.658|GO:0019207_0.656|GO:0019901_0.656|GO:0019887_0.654|GO:0004860_0.650|GO:0019210_0.650|GO:0034237_0.650|GO:0051018_0.650
|
IPR007967+51-155+|IPR023231+40-159_49-161+|IPR037395+41-163+
|
— |
PF05303+51-155+GSKIP_domain
|
— |
PTHR12490+41-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;149-190
|
1.000
|
40-148
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
20737.510
|
4.043
|
-18.000
|
26.842
|
6.316
|
55.263
|
44.737
|
8.947
|
17.895
|
55.263
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
960.798
|
600.223
|
738.323
|
745.922
|
823.939
|
758.100
|
958.542
|
905.335
|
1603.553
|
926.934
|
1216.914
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.176
|
— | — | — |
0.349
|
— |
0.225
|
— | — | — | — | — |
No JSON data available for plots.