SCN Proteipedia

Hg_chrom7_TN10mRNA_14150

Organism: Heterodera glycines Gene Locus: chr7:5641178-5644987 Feature type: polypeptide

Protein Sequence

Length: 635

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.549	1.282	0.888	1.249	0.551	1.171	0.6	1.89	0.98	1.341	0.597	1.575	1.662	0.999	1.35	1.62	0.852	0.787	0.485	1.019	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13353	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	RRSLKSQSQIAKIRKE	62-82	0.997	—	—	—	—	0.000	—	—	0.599	0.303	0.006	0.676	0.106	0.194	0.093	0.040	0.117	0.007

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011322	1.000	1.000	Hsc_gene_19735.t1	Hsc_gene_19735.t1	—	Q9NYY3.3 Serine/threonine-protein kinase PLK2 [Homo sapiens]	KAI3409855.1 Serine/threonine-protein kinase plk1 [Globodera pallida]	No	-0.150

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005515\|GO:0005524\|GO:0006468	GO:0005575_0.908\|GO:0110165_0.906\|GO:0008150_0.901\|GO:0009987_0.860\|GO:0005622_0.811\|GO:0065007_0.769\|GO:0050789_0.762\|GO:0003674_0.753\|GO:0050794_0.750\|GO:0003824_0.697\|GO:0140096_0.697\|GO:0016043_0.695\|GO:0071840_0.695\|GO:0043226_0.672\|GO:0016740_0.657\|GO:0043229_0.630\|GO:0016020_0.628\|GO:0004672_0.606\|GO:0016301_0.606\|GO:0016772_0.606\|GO:0016773_0.606\|GO:0006996_0.603\|GO:0007049_0.546\|GO:0022402_0.542\|GO:0050896_0.535\|GO:0048518_0.528\|GO:0051716_0.519\|GO:0007154_0.510\|GO:0008152_0.509\|GO:0004674_0.502\|GO:0023052_0.502	IPR000719+41-299_43-297+\|IPR000959+401-483+\|IPR008271+162-174+\|IPR011009+38-300+\|IPR017441+47-68+\|IPR033701+402-486+\|IPR036947+403-499+	SM00220+41-299+	PF00069+43-297+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000571+36-305+Maternal_embryonic_leucine_zipper_kinase\|G3DSA:3.30.200.20:FF:000042+33-122+Aurora_kinase_A	PTHR24345+31-549+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-635	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.919	71929.980	8.639	27.000	22.520	13.858	49.134	50.866	14.331	8.189	50.709

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	1640.744	629.237	488.282	557.315	726.094	768.339	2163.161	657.707	392.823	4637.338	2818.260

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.596	-0.312	0.300	0.350	—	1.502	-0.332	1.860	—	—	—	—	—

No JSON data available for plots.

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