Hg_chrom7_TN10mRNA_14151
Organism: Heterodera glycines Gene Locus: chr7:5645180-5649128 Feature type: polypeptideProtein Sequence
Length: 970
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.223 | 1.143 | 0.711 | 1.306 | 1.375 | 0.896 | 1.598 | 0.733 | 1.128 | 0.812 | 1.759 | 0.888 | 0.952 | 1.578 | 1.031 | 0.913 | 0.765 | 0.555 | 0.364 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13354
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.614
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRSR,RKGKRRA,KIERRRHHG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.409
|
0.039
|
0.634
|
0.255
|
0.279
|
0.368
|
0.129
|
0.463
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011323
|
1.000
|
1.000
|
Hsc_gene_19736.t1
|
Hsc_gene_19736.t1
|
— |
Q0KIA2.1 PP2C-like domain-containing protein CG9801 [Drosophila melanogaster]
|
KAI1714733.1 protein phosphatase 2C domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001932+219-530_222-528+|IPR036457+238-445_243-420+|IPR053287+38-653+
|
SM00332+222-528+
|
PF13672+237-425+Protein_phosphatase_2C
|
— |
PTHR21586+38-653+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-198;519-573;658-970
|
2.000
|
199-518;574-657
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
108372.470
|
6.801
|
5.500
|
30.412
|
8.351
|
53.814
|
46.186
|
16.289
|
14.124
|
50.722
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
midnightblue
|
1514.010
|
1248.557
|
1639.801
|
1500.394
|
1875.266
|
1794.649
|
2355.174
|
2444.626
|
660.698
|
1306.343
|
1029.638
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.163
|
0.128
|
— |
0.290
|
— |
0.403
|
0.338
|
— | — | — | — | — | — |
No JSON data available for plots.