Hg_chrom7_TN10mRNA_14153
Organism: Heterodera glycines Gene Locus: chr7:5669306-5671227 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.092 | 0.57 | 1.262 | 0.422 | 1.088 | 0.628 | 0.875 | 0.816 | 0.998 | 1.213 | 0.742 | 1.441 | 1.474 | 1.256 | 1.249 | 1.341 | 0.669 | 0.989 | 1.256 | 0.48 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13356
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.776
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.360
|
0.339
|
0.067
|
0.609
|
0.110
|
0.361
|
0.218
|
0.385
|
0.134
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011325
|
1.000
|
1.000
|
Hsc_gene_19739.t1
|
Hsc_gene_19739.t1
|
— |
O17433.2 1-Cys peroxiredoxin [Dirofilaria immitis]
|
KAI3409861.1 C-terminal domain of 1-Cys peroxiredoxin [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016209|GO:0016491|GO:0051920|GO:0098869
|
GO:0008150_0.818|GO:0003674_0.711|GO:0009987_0.702|GO:0005575_0.693|GO:0110165_0.692|GO:0050896_0.650|GO:0005622_0.561|GO:0042221_0.558|GO:0051716_0.547|GO:0005737_0.515|GO:0016020_0.502
|
IPR000866+5-151+|IPR013766+2-176+|IPR019479+173-208+|IPR024706+1-233+|IPR036249+1-211+|IPR045020+4-229+
|
— |
PF00578+5-151+AhpC/TSA_family|PF10417+173-208+C-terminal_domain_of_1-Cys_peroxiredoxin
|
G3DSA:3.40.30.10:FF:000011+2-162+Peroxiredoxin_PRX1
|
PTHR43503+2-231+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
222-245
|
1.000
|
1-221
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
26880.510
|
5.163
|
-4.000
|
26.122
|
10.204
|
44.490
|
55.510
|
12.653
|
13.469
|
53.878
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
876.589
|
767.246
|
826.221
|
945.426
|
909.990
|
898.188
|
1128.123
|
891.814
|
825.756
|
828.131
|
827.113
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.164
|
0.304
|
— | — |
0.339
|
— |
0.482
|
— | — | — | — | — |
No JSON data available for plots.