SCN Proteipedia

Hg_chrom7_TN10mRNA_14154

Organism: Heterodera glycines Gene Locus: chr7:5671543-5672405 Feature type: polypeptide

Protein Sequence

Length: 206

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.242	0.79	1.059	0.335	1.861	1.494	0.462	0.485	1.079	1.706	0.809	0.857	1.214	0.467	1.288	1.318	0.955	0.294	0.373	0.714	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13357	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.639

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	1-21	0.977	—	—	—	—	0.000	—	—	0.625	0.106	0.008	0.452	0.129	0.196	0.110	0.039	0.051	0.220

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011326	1.000	1.000	Hsc_gene_19740.t1	Hsc_gene_19740.t1;Hsc_gene_25900.t1	—	Q5ZKG8.1 Golgi to ER traffic protein 4 homolog [Gallus gallus]	KAI1725887.1 golgi to ER traffic protein 4 like protein [Ditylenchus destructor]	No	-0.170

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0045048	GO:0008150_0.927\|GO:0005575_0.925\|GO:0110165_0.913\|GO:0005622_0.881\|GO:0009987_0.872\|GO:0065007_0.835\|GO:0005737_0.832\|GO:0016020_0.822\|GO:0043226_0.816\|GO:0003674_0.805\|GO:0043229_0.804\|GO:0005488_0.802\|GO:0005515_0.791\|GO:0050896_0.780\|GO:0051716_0.769\|GO:0043227_0.768\|GO:0071840_0.768\|GO:0008152_0.764\|GO:0016043_0.761\|GO:0051179_0.750\|GO:0044238_0.746\|GO:0043170_0.744\|GO:0043231_0.739\|GO:0051234_0.737\|GO:0006950_0.729\|GO:0051641_0.728\|GO:0006996_0.723\|GO:0019538_0.723\|GO:0042221_0.712\|GO:0033554_0.709\|GO:0008104_0.700\|GO:0033036_0.700\|GO:0070727_0.700\|GO:0009056_0.695\|GO:0065008_0.694\|GO:0061024_0.693\|GO:0045184_0.690\|GO:0009057_0.689\|GO:0032991_0.683\|GO:0033365_0.683\|GO:0051668_0.682\|GO:1901698_0.682\|GO:0030163_0.681\|GO:0006508_0.680\|GO:0072594_0.680\|GO:0010256_0.678\|GO:0072657_0.678\|GO:0006605_0.677\|GO:0031647_0.676\|GO:0043632_0.676\|GO:0051603_0.676\|GO:0010498_0.675\|GO:0051235_0.675\|GO:0090150_0.675\|GO:0006511_0.674\|GO:0019941_0.674\|GO:0034976_0.674\|GO:0005829_0.670\|GO:0006612_0.670\|GO:0006620_0.670\|GO:0007029_0.670\|GO:0036503_0.670\|GO:0036506_0.670\|GO:0045047_0.670\|GO:0045048_0.670\|GO:0045185_0.670\|GO:0051205_0.670\|GO:0051220_0.670\|GO:0070972_0.670\|GO:0071816_0.670\|GO:0072599_0.670\|GO:0043228_0.650\|GO:0043232_0.650\|GO:0051087_0.650\|GO:0005634_0.645\|GO:0031974_0.589\|GO:0043233_0.589\|GO:0070013_0.589\|GO:0031981_0.582\|GO:0005654_0.564\|GO:0005694_0.553\|GO:0005730_0.552\|GO:0071818_0.540\|GO:0072379_0.540	IPR007317+3-139_39-158+\|IPR011990+1-169+	—	PF04190+39-158+Golgi_to_ER_traffic_protein_4	—	PTHR12875+3-139+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	162-206	1.000	1-161	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.778	23189.950	4.503	-10.000	29.612	8.252	53.883	46.117	12.621	16.990	44.175

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1192.429	1093.532	771.631	1020.471	1136.593	1111.847	1162.002	1161.623	1482.945	1308.029	1382.993

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.732	-0.237	0.512	0.124	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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