Hg_chrom7_TN10mRNA_14155
Organism: Heterodera glycines Gene Locus: chr7:5672636-5674326 Feature type: polypeptideProtein Sequence
Length: 141
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.66 | 0.99 | 0.645 | 0.245 | 0.709 | 1.455 | 2.871 | 0.709 | 1.261 | 0.767 | 0.43 | 2.92 | 1.182 | 0.546 | 2.171 | 0.304 | 0.93 | 0.752 | 0.0 | 0.209 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13358
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
GAPRGRGSAFRGGGRGGGRGRGGFGRGGRGGG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.682
|
0.101
|
0.010
|
0.388
|
0.140
|
0.067
|
0.035
|
0.000
|
0.067
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004588
|
1.000
|
2.000
|
Hsc_gene_19741.t1;Hsc_gene_25901.t1
|
Hsc_gene_19741.t1;Hsc_gene_25901.t1
|
— |
Q17348.2 Small nuclear ribonucleoprotein Sm D3 [Caenorhabditis elegans]
|
KAH7711322.1 Protein SNR-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000387|GO:0003723|GO:0005681|GO:0006396
|
GO:0005575_0.881|GO:0110165_0.871|GO:0005622_0.762|GO:0043226_0.727|GO:0043229_0.727|GO:0008150_0.674|GO:0016020_0.672|GO:0009987_0.609|GO:0043227_0.602|GO:0043231_0.601|GO:0005737_0.525|GO:0005634_0.514|GO:0003674_0.504
|
IPR001163+9-74_10-73+|IPR010920+7-133+|IPR027141+6-114+|IPR034099+7-76+|IPR047575+6-78+
|
SM00651+9-74+
|
PF01423+10-73+LSM_domain
|
G3DSA:2.30.30.100:FF:000002+1-85+Small_nuclear_ribonucleoprotein_Sm_D3
|
PTHR23338+6-114+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
85-141
|
1.000
|
1-84
|
8ro1_h
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.949
|
14746.750
|
11.578
|
9.000
|
22.695
|
6.383
|
40.426
|
59.574
|
14.894
|
7.801
|
53.901
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
1158.213
|
1130.442
|
922.133
|
2333.428
|
2340.329
|
1410.157
|
937.502
|
595.724
|
295.670
|
1219.288
|
823.452
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.523
|
0.909
|
1.448
|
— |
-0.716
|
-0.579
|
-1.346
|
0.795
|
— | — | — | — | — |
No JSON data available for plots.