Hg_chrom7_TN10mRNA_14158
Organism: Heterodera glycines Gene Locus: chr7:5684125-5686884 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 0.933 | 0.561 | 0.319 | 1.595 | 3.086 | 0.551 | 2.469 | 0.617 | 1.001 | 0.889 | 2.36 | 0.857 | 1.187 | 1.386 | 1.058 | 1.012 | 0.281 | 0.95 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13361
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.492
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRNGERDETTTHRKERKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.740
|
0.169
|
0.005
|
0.337
|
0.057
|
0.053
|
0.142
|
0.021
|
0.074
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004590
|
1.000
|
2.000
|
Hsc_gene_19743.t1;Hsc_gene_23170.t1
|
Hsc_gene_19743.t1;Hsc_gene_19744.t1;Hsc_gene_23170.t1
|
— |
Q93899.2 Homeobox protein vab-7 [Caenorhabditis elegans]
|
KAI6177139.1 Segmentation protein even-skipped [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.875|GO:0009987_0.724|GO:0005575_0.703|GO:0110165_0.696|GO:0050789_0.694|GO:0065007_0.694|GO:0050794_0.684|GO:0032502_0.674|GO:0005622_0.661|GO:0043226_0.638|GO:0043229_0.638|GO:0003674_0.621|GO:0005488_0.621|GO:0032501_0.621|GO:0008152_0.618|GO:0019222_0.618|GO:0031323_0.618|GO:0044237_0.618|GO:0043170_0.612|GO:0060255_0.612|GO:0009058_0.611|GO:0009059_0.611|GO:0010467_0.611|GO:0044249_0.611|GO:0016020_0.607|GO:0048856_0.605|GO:0009889_0.599|GO:0031326_0.599|GO:0010468_0.596|GO:0010556_0.596|GO:0007275_0.595|GO:0003676_0.580|GO:0097159_0.580|GO:0044238_0.578|GO:0080090_0.578|GO:0006139_0.571|GO:0016070_0.571|GO:0032774_0.571|GO:0034654_0.571|GO:0090304_0.571|GO:0141187_0.571|GO:0006351_0.565|GO:0019219_0.564|GO:0051252_0.564|GO:2001141_0.554|GO:0005634_0.548|GO:0043227_0.548|GO:0043231_0.548|GO:0006355_0.546|GO:0003677_0.533|GO:0043565_0.504|GO:0003690_0.502|GO:1990837_0.502
|
IPR001356+113-173_115-177_116-172_116-174+|IPR009057+100-174+|IPR017970+148-171+|IPR052002+29-184+
|
SM00389+115-177+
|
PF00046+116-172+Homeodomain
|
— |
PTHR46294+29-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-124;234-324
|
1.000
|
125-233
|
1jgg_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
37588.940
|
7.671
|
8.000
|
30.247
|
11.111
|
59.877
|
40.123
|
17.593
|
12.654
|
40.432
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
59.614
|
113.095
|
169.359
|
45.686
|
14.765
|
27.723
|
56.837
|
89.616
|
47.757
|
31.090
|
38.233
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.355
|
-1.445
|
-1.784
|
-1.664
|
0.926
|
1.048
|
1.590
|
-0.514
|
— | — | — | — | — |
No JSON data available for plots.