SCN Proteipedia

Hg_chrom7_TN10mRNA_14162

Organism: Heterodera glycines Gene Locus: chr7:5711562-5727490 Feature type: polypeptide

Protein Sequence

Length: 2,142

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.917	0.695	0.705	0.869	0.778	1.269	0.723	1.564	0.82	1.104	0.439	1.044	1.012	1.679	1.62	1.921	0.934	0.828	0.467	0.549	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13364	—	Hg_chrom7_TN10gene_13364	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RPRR,KPSLK,RRSRQRYALKKMKKQ,KRMTEIMGTNELTKKRAA,PRRNIGKPLRKKPRRPPTAQQKNKQQSRKGSALLRRL	40-60	0.929	47-78	1.000	—	—	0.000	—	—	0.387	0.193	0.029	0.626	0.207	0.153	0.141	0.100	0.419	0.040

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011327	1.000	1.000	Hsc_gene_8214.t1	—	—	O60307.2 Microtubule-associated serine/threonine-protein kinase 3 [Homo sapiens]	KAI1709955.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000287\|GO:0004672\|GO:0004674\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.875\|GO:0009987_0.793\|GO:0005575_0.779\|GO:0110165_0.777\|GO:0003674_0.775\|GO:0003824_0.690\|GO:0140096_0.690\|GO:0016740_0.687\|GO:0016772_0.675\|GO:0065007_0.675\|GO:0005622_0.670\|GO:0004672_0.669\|GO:0016301_0.669\|GO:0016773_0.669\|GO:0050789_0.648\|GO:0004674_0.617\|GO:0050794_0.596\|GO:0032502_0.577\|GO:0043226_0.565\|GO:0016020_0.562\|GO:0005488_0.543\|GO:0043229_0.534\|GO:0016043_0.516\|GO:0071840_0.516\|GO:0032501_0.515\|GO:0048856_0.514	IPR000719+1263-1538_1264-1538+\|IPR000961+1539-1607+\|IPR001478+1964-2051_1965-2054_1973-2054+\|IPR008271+1382-1394+\|IPR011009+1261-1603+\|IPR015022+832-952_1076-1209+\|IPR023142+1068-1155_1078-1159+\|IPR036034+1938-2052_1963-2059+\|IPR037711+1262-1543+\|IPR041489+1998-2032+\|IPR050236+923-1578+	SM00220+1263-1538+\|SM00228+1973-2054+	PF00069+1264-1538+Protein_kinase_domain\|PF08926+832-952_1076-1209+Domain_of_unknown_function_(DUF1908)\|PF17820+1998-2032+PDZ_domain	G3DSA:1.10.510.10:FF:000012+1343-1555+microtubule-associated_serine/threonine-protein_kinase_2_isoform_X1\|G3DSA:1.20.1480.20:FF:000001+1067-1155+microtubule-associated_serine/threonine-protein_kinase_4_isoform_X1\|G3DSA:3.30.200.20:FF:000012+1261-1355+microtubule-associated_serine/threonine-protein_kinase_2_isoform_X1	PTHR24356+923-1578+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-119;187-280;375-453;743-812;959-1009;1604-1969;2009-2142	6.000	120-186;281-374;454-742;813-958;1010-1603;1970-2008	5loh_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.964	233380.170	9.104	82.500	22.502	9.244	49.580	50.420	13.959	8.543	56.676

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	5832.666	10551.967	10244.768	5865.158	4238.013	4792.220	5683.453	8495.596	3280.727	4355.677	3894.984

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.272	-0.985	-0.696	-0.500	0.192	0.256	0.724	-0.438	—	—	—	—	—

No JSON data available for plots.

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