Hg_chrom7_TN10mRNA_14165
Organism: Heterodera glycines Gene Locus: chr7:5729442-5731400 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 1.852 | 1.158 | 0.549 | 1.858 | 0.572 | 0.72 | 1.911 | 0.92 | 0.559 | 1.496 | 1.686 | 1.15 | 0.796 | 1.43 | 0.364 | 0.47 | 0.627 | 2.45 | 1.592 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13367
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.945
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.056
|
0.862
|
0.032
|
0.267
|
0.428
|
0.125
|
0.228
|
0.059
|
0.224
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011329
|
1.000
|
1.000
|
Hsc_gene_8216.t1
|
Hsc_gene_8216.t1
|
— |
Q1HPL8.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 [Bombyx mori]
|
KHN76737.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.862|GO:0110165_0.862|GO:0005622_0.840|GO:0043226_0.774|GO:0005737_0.770|GO:0043229_0.767|GO:0016020_0.747|GO:0043227_0.716|GO:0043231_0.704|GO:0032991_0.673|GO:0008150_0.593|GO:1902494_0.587|GO:0005739_0.564|GO:0098796_0.549|GO:0030964_0.540|GO:0045271_0.540|GO:0098803_0.540|GO:1902495_0.540|GO:1990204_0.540|GO:1990351_0.540|GO:0009987_0.531
|
IPR019377+58-177+|IPR039993+77-173+
|
— |
PF10249+58-177+NADH-ubiquinone_oxidoreductase_subunit_10
|
— |
PTHR13094+77-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;239-314
|
1.000
|
4-238
|
8esz_BL
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.600
|
37494.920
|
7.092
|
4.000
|
38.217
|
16.561
|
53.822
|
46.178
|
20.701
|
17.516
|
42.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
4405.421
|
2629.789
|
2714.048
|
3252.434
|
4770.058
|
4758.251
|
3099.764
|
2964.874
|
7685.876
|
4438.351
|
5830.147
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.184
|
0.169
|
0.370
|
0.520
|
— |
-0.607
|
-0.788
|
0.208
|
— | — | — | — | — |
No JSON data available for plots.