SCN Proteipedia

Hg_chrom7_TN10mRNA_14166

Organism: Heterodera glycines Gene Locus: chr7:5731623-5736372 Feature type: polypeptide

Protein Sequence

Length: 1,199

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.65	1.028	0.971	0.633	1.362	1.369	0.794	1.084	1.575	1.093	0.783	2.502	0.95	0.834	1.311	0.786	0.943	0.96	0.513	1.006	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13368	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.788	0.140	0.042	0.342	0.053	0.074	0.023	0.028	0.128	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011330	1.000	1.000	Hsc_gene_8217.t1	Hsc_gene_8217.t1	—	Q10578.2 DNA-directed RNA polymerase II subunit RPB2 [Caenorhabditis elegans]	KAI3409870.1 DNA-dependent RNA polymerase II [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003899\|GO:0006351\|GO:0032549	GO:0005575_0.852\|GO:0110165_0.792\|GO:0008150_0.759\|GO:0005622_0.717\|GO:0016020_0.676\|GO:0009987_0.658\|GO:0043226_0.656\|GO:0043229_0.626\|GO:0043227_0.582\|GO:0003674_0.572\|GO:0043231_0.559\|GO:0008152_0.544\|GO:0044238_0.524\|GO:0044237_0.518\|GO:0032991_0.512\|GO:0009058_0.506\|GO:0043170_0.501	IPR007120+732-1105+\|IPR007121+957-969+\|IPR007641+1107-1198+\|IPR007642+226-417+\|IPR007644+63-464+\|IPR007645+491-555+\|IPR007646+590-652+\|IPR007647+680-725+\|IPR014724+763-953+\|IPR015712+47-1199_64-1197+\|IPR037033+733-1091+\|IPR037034+232-407+	—	PF00562+732-1105+RNA_polymerase_Rpb2,_domain_6\|PF04560+1107-1198+RNA_polymerase_Rpb2,_domain_7\|PF04561+226-417+RNA_polymerase_Rpb2,_domain_2\|PF04563+63-464+RNA_polymerase_beta_subunit\|PF04565+491-555+RNA_polymerase_Rpb2,_domain_3\|PF04566+590-652+RNA_polymerase_Rpb2,_domain_4\|PF04567+680-725+RNA_polymerase_Rpb2,_domain_5	G3DSA:2.40.270.10:FF:000011+945-1091+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:2.40.50.150:FF:000002+822-953+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:3.90.1070.20:FF:000001+558-640+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:3.90.1100.10:FF:000003+56-237+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:3.90.1100.10:FF:000005+404-631+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:3.90.1110.10:FF:000002+238-407+DNA-directed_RNA_polymerase_subunit_beta\|G3DSA:3.90.1800.10:FF:000002+1092-1199+DNA-directed_RNA_polymerase_subunit_beta	PTHR20856+47-1199+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-43	1.000	44-1199	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.512	136226.810	5.891	-10.000	27.273	9.675	48.290	51.710	13.761	13.511	45.788

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	4201.076	4699.457	3923.882	4382.575	4582.973	3673.041	3819.744	3210.331	4259.355	4575.689	4440.117

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.490	-0.238	0.268	—	-0.304	—	-0.300	0.394	—	—	—	—	—

No JSON data available for plots.

Back to Browser