Hg_chrom7_TN10mRNA_14169
Organism: Heterodera glycines Gene Locus: chr7:5742835-5743878 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 0.769 | 0.601 | 0.855 | 1.515 | 0.742 | 0.885 | 1.446 | 1.286 | 1.452 | 0.751 | 2.917 | 0.918 | 1.033 | 1.181 | 1.004 | 0.813 | 0.814 | 1.271 | 0.365 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13371
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.546
|
0.207
|
0.033
|
0.708
|
0.120
|
0.148
|
0.138
|
0.082
|
0.136
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011331
|
1.000
|
1.000
|
Hsc_gene_8219.t1
|
Hsc_gene_8219.t1;Hsc_gene_8219.t2
|
— |
Q23261.2 Probable methylthioribulose-1-phosphate dehydratase [Caenorhabditis elegans]
|
KAF7638455.1 Aldolase_II domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737|GO:0019509|GO:0046872
|
GO:0005575_0.889|GO:0110165_0.888|GO:0005622_0.818|GO:0008150_0.711|GO:0005737_0.648|GO:0009987_0.644
|
IPR001303+36-235_39-233+|IPR017714+39-239+|IPR036409+33-242_38-239+
|
SM01007+36-235+
|
PF00596+39-233+Class_II_Aldolase_and_Adducin_N-terminal_domain
|
G3DSA:3.40.225.10:FF:000003+30-242+Methylthioribulose-1-phosphate_dehydratase
|
PTHR10640+31-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30
|
1.000
|
31-242
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
26956.210
|
6.381
|
-0.500
|
26.033
|
9.091
|
44.215
|
55.785
|
13.636
|
12.397
|
46.694
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
8.115
|
28.473
|
19.514
|
11.957
|
8.373
|
10.447
|
6.384
|
9.530
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.771
|
-1.389
|
— | — | — | — | — | — | — |
4.437
|
— | — | — |
No JSON data available for plots.