SCN Proteipedia

Hg_chrom7_TN10mRNA_14170

Organism: Heterodera glycines Gene Locus: chr7:5746745-5751714 Feature type: polypeptide

Protein Sequence

Length: 1,035

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.764	0.989	0.931	0.7	1.498	1.387	0.552	0.676	1.331	1.423	1.113	1.876	1.315	0.743	1.163	0.939	0.713	0.908	0.743	0.71	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13372	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KKLSGLVELGYRKRVL,KRCEERFTEHPLRNRRD,RRDFDEIWEAFMKRQKL	—	—	—	—	—	—	0.000	—	—	0.653	0.220	0.040	0.499	0.096	0.087	0.100	0.017	0.069	0.048

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011332	1.000	1.000	Hsc_gene_8220.t1	Hsc_gene_8220.t1;Hsc_gene_8221.t1	—	Q9CZU3.1 Exosome RNA helicase MTR4 [Mus musculus]	KAI3409876.1 Exosome RNA helicase MTR4 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0003724\|GO:0005524\|GO:0006401	GO:0008150_0.928\|GO:0005575_0.858\|GO:0110165_0.856\|GO:0009987_0.818\|GO:0005622_0.803\|GO:0003674_0.696\|GO:0016020_0.690\|GO:0008152_0.674\|GO:0044238_0.662\|GO:0043170_0.634\|GO:0043226_0.632\|GO:0006139_0.609\|GO:0043229_0.607\|GO:0090304_0.590\|GO:0043227_0.568\|GO:0044237_0.560\|GO:0043231_0.554\|GO:0009058_0.551\|GO:0016070_0.544\|GO:0044249_0.543\|GO:0065007_0.529\|GO:0009059_0.522\|GO:0050789_0.512\|GO:0003824_0.507\|GO:0010467_0.505	IPR001650+367-568_433-522_443-522+\|IPR011545+132-280+\|IPR012961+859-1035_862-1030+\|IPR014001+125-309_137-293+\|IPR016438+2-1035+\|IPR025696+640-833+\|IPR027417+98-301_140-536_302-554+\|IPR048392+577-638+\|IPR050699+39-1034+	SM00487+125-309+\|SM00490+433-522+\|SM01142+859-1035+	PF00270+132-280+DEAD/DEAH_box_helicase\|PF00271+443-522+Helicase_conserved_C-terminal_domain\|PF08148+862-1030+DSHCT_(NUC185)_domain\|PF13234+640-833+Mtr4-like,_beta-barrel_domain\|PF21408+577-638+Exosome_RNA_helicase_MTR4-like,_stalk	G3DSA:3.40.50.300:FF:000083+99-301+ATP-dependent_RNA_helicase_DOB1\|G3DSA:3.40.50.300:FF:000141+302-554+ATP-dependent_RNA_helicase_DOB1	PTHR12131+39-1034+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-90	1.000	91-1035	6c90_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.513	118270.110	6.115	-4.000	28.502	9.469	49.082	50.918	14.396	14.106	43.382

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkturquoise	2936.235	4101.835	3239.614	3717.533	3817.336	3076.524	2971.230	2755.620	2357.828	2197.774	2266.369

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.570	-0.279	0.307	—	-0.296	—	-0.265	0.252	—	—	—	—	—

No JSON data available for plots.

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